RNA id: XM_043246231.1


Basic Information

Item Value
RNA id XM_043246231.1
length 2061
RNA type mRNA
GC content 0.45
exon number 13
gene id porcnl
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11250881 ~ 11256508 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACCGGCTCTGCGGAGGAAGTGAACGGTGAACGCCGCGCGCTGGAGTCAAGTTTGGTTGAACTCCGGGATGTCCGTTTACACGACAGCGGTTGCGTTCGTACACTGATGAGTCTTACAGATGTTTGTGGTCGTATTAACGGAATGGAAAGGACACCTGGGTGAGCTGGACGAAACATTCAACTGGAAAAAGCCTCAGTCTACTTCCGGGTGTGTGGTTGTAGCGCAGGATACTTGTGTGCTCCTGGAAATCGATTCTGTCCGTGTGTAACAGCATTTCAGGGGCATTCCCATGGATTCCTTTGGTCGTGTGGAGTTCCTGCAGGCTCTAGCAGAGGGCTGTGTGCTGCCCACCGCCCAGCAGGGTTTAGAGCAGGTCTGGCAGCTTCTGCTTGTCTGCCTGCTGTGTCGGGTCATCTGTAGACTAGGTGTCTCATGTCATGTGAAGCATCTGAGCTCGCTGGCGGGCGGCCTGTACGTGTTGTACGTGTTCTTTGAGCTGCACATGATGTGGGTGATTATCCTGTGCCTCCTTTGCTACCTTGTCCTGCTTCTCAGCATAAACTCCAGCAGCCGAGGAGTCTTCCTTTCCGTCGTCATCCTCATCTACATGCTGATGGGGGAGCTACACATGATAGACGCAGAGACCTGGCATAAGATGAGAgGCTCTCAGATGGTGGTGGCCATGAAGGCCATCTCTCTGGCTTTTGACCTTGATCGAGGCGCTGTATCTTCTTTTCCCTCCCCGCTGGAGTTCATGGGATACCTTTGCTTTGCGGGAACTGTTATCTTTGGCCCATGGATCAGTTTTGTCCGCTACACAGACGCAATTAATGGGCGCAAAATGAGCGTTGGCTGGTTTGGAAAGATTGCTCTGAGCTTTCTGAGGAGTCAGATGTGCCTGGTTATTTCCAACTGTATTGCTCCTTATCTCTTTCCATACTTCATTCCCATCTACGGTGACGGACTTCCTCGTAGGTGGCTTCACGCTTATGAAAATGCAGTGTCCTTCCACTTCAGCAATTATTTTGTCAGCTACTTGAGTGAAACAACCACTGTGATGGCTGGAGCTGGATTCTCTGAACACAAAGACCACATCAAATGGGATATTACAGTAGCTAAACCTATGAATGTGGAATTGCCGAGGTCTATGGTGGAAGTTGTTACCTCTTGGAATCTGCCCATGTCTAAGTGGCTTAACGCATACGTCTTTAAAAGCGCACTTAAACTTGGCACTTTTCCCGCCATCTTGGTGACCTACACTGCCAGCGCACTATTACATGGTCTCAGCTTTCATCTGGGGGCTGTACTGTTGTCTTTGGGATTCATCACTTATGTTGAACATGTTCTGAGAAAGCGGTTGGCAGCTATTTTCAGTGCTTGTATACTGTCAAAGCACTGCCCAAATGACTGCCATCACCAAAATAAGAAGATGCTGTGGGTGTATGGTGTTAATCTGTTCTTCAGTGCATTGTCAATATTCCATCTGACATATCTGGGATCACTGTTTGACTCTGAAATGGACAACATGCATGCTGAAGAGGGATACATGGCCAGTCACACCATTCAAAAGTGGTCAGAGTTAAACTGGGCGAGCCATTGGGTGATGTTTGGCTGCTTCGTGTTTTATTGGCTCATTTAAGGAGAATACTACAGTATTGAGCGATCAAAGGACAATTCACTGAACTTGAAAATGATGGTGGATTCTTATCACTGACTGCATTTTTCAATAGTCAGCGTTACATTCACACTCCTGTCCTTCAGCTGCAAAAGACTGCCATAAGAAGTGCCTTTTGATACATGTTGTTACAAGAATCTTATGTGATCgtgattgttatttttattttgattaggtacgtgattttttttttctgtaaagcttGATATAAATACTAGAAAGCATAGTCTCTGTCATTGTTGCCATGTTGTTGTCACTTTTATAAAACATGTCTTGAACCTGTaaacatgtttcatattttcatcaAAAGCTGTTGATTAGGTCTgacataatatttataattttctaataaaatttGTCACCGAGACTATTGTTCATTAATTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93238 lncRNA downstream 40720 11201695 ~ 11210161 (-) True G62977
TU93235 lncRNA downstream 45508 11197153 ~ 11205373 (-) True G62974
TU93215 lncRNA downstream 81408 11131670 ~ 11169473 (-) True smim1
XR_006251671.1 lncRNA downstream 425830 10819217 ~ 10825051 (-) True LOC122351000
TU93075 lncRNA downstream 493969 10756533 ~ 10756912 (-) False LOC122350960
TU93256 lncRNA upstream 19851 11276359 ~ 11276914 (-) True G62992
TU93312 lncRNA upstream 150446 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA upstream 176273 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA upstream 176273 11432781 ~ 11441818 (-) False G63014
TU93299 lncRNA upstream 181238 11437746 ~ 11441996 (-) True G63014
XM_043247996.1 mRNA downstream 298 11235474 ~ 11250583 (-) False csde1
XM_043247995.1 mRNA downstream 298 11235474 ~ 11250583 (-) False csde1
XM_043247994.1 mRNA downstream 298 11235474 ~ 11250583 (-) False csde1
XM_043247993.1 mRNA downstream 298 11235474 ~ 11250583 (-) False csde1
XM_043247990.1 mRNA downstream 298 11235474 ~ 11250583 (-) False csde1
XM_043246617.1 mRNA upstream 27846 11284354 ~ 11345988 (-) True LOC122350269
XM_043246404.1 mRNA upstream 94796 11351304 ~ 11392669 (-) False magixa
XM_043246402.1 mRNA upstream 94796 11351304 ~ 11392669 (-) True magixa
XM_043246405.1 mRNA upstream 94796 11351304 ~ 11392668 (-) False magixa
XM_043246403.1 mRNA upstream 94796 11351304 ~ 11387953 (-) False magixa
TU93213 other downstream 119674 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 260177 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 710590 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 772196 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 858838 10389183 ~ 10392043 (-) True G62760
TU93259 other upstream 67396 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 305770 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 305770 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 305770 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 521763 11778271 ~ 11779251 (-) True G63274

Expression Profile