RNA id: XM_043246270.1


Basic Information

Item Value
RNA id XM_043246270.1
length 5330
RNA type mRNA
GC content 0.48
exon number 20
gene id bmp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21855648 ~ 21919678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTCTCCGTCCGTACCTCTATTCCTGCTCCACTAGCCCAATCATGGACCTCGCAGCGAGGTGTGCGTTCCTGCTCTCCAGCTTCGCCGTGCTCGCAGCGCTCGATCTGGACGCGGTCGACCCCGACTACTACGTGGAGACCGGCAGCCCGTCAGATGCGATCGACTACAAGGATCCCTGCAAAGCCGttgctTATCTGGGAGATATTGCACTGGATGAGGAAGACCTGCGGATGTTTAAAGTGGATCGCATTGTGAATTTAGCAGAGAGAACGGTCACAGTTCTGAACCACACAGATGCTGGTTCACTTTCCAATGAGACGAGTACAAACAATACGGCGTCCCATCGCAGGAAGAGGGCAGCGACGTCGAGACCTGAGCGAATTTGGCCCGAGGGCGTCATTCCTTACGTCATCAGCGGGAACTTCAGCGGTAGCCAGAGAGCCATATTCAGACAGGCCATGAGACACTGGGAAAAACACACATGTGTGACGTTCATCGAGAGAACGACAGAAGAGAGCTACATCGTCTTCACCTACCGGCCGTGTGGGTGCTGTTCGTTTGTGGGCCGGAGAGGAGGGGTTCCGCAGGCCATATCCATCGGGAAGAACTGTGATAAGTTTGGGATCGTGGTCCATGAGCTGGGTCACGTGATCGGATTCTGGCATGAGCACACGCGACCCGACAGAGACGATCATGTCAGAATCATACAGGAAAACATTCAGCCAgGACAGGAGTACAACTTCTTAGAGATGGAGCCTGGTCAAGTGGACTCACTCGGAGAGGTCTATGACTTCGACAGCATCATGCACTATGCAAGAAACACTTTCTCCAGaGGGATATTTTTGGACACCATTCTGCCACGATATGACGTGAACGGAGTTCGGCCGCCCATCGGTCAGAGGACCAGGCTGAGCAAAGGAGACATCTCACAGGCACGCAAACTTTACAAGTGTCCAAAATGTGGAGACAGTTTGCAGGAGAGCAGTGGAAACTTCTCTTCACCTGGTTTTCCCAATGGTTATTCAGCATATATGCACTGCATATGGAGAATTTCAGTCACACCGGGAGAAAAGATCATTCTGAACTTTACATCTATGGATTTGTACCGGAGTCATTTGTGCTGGTATGATCACGTGGAGATCAGAGATGGATATTGGAGGAAAGCGCCACTGAAAGGTCGATTCTGTGGGGATAAATTACCTGAGCCGATCGTCTCTACAGACAGTCGTCTTTGGATTGAGTTTCGCAGCAGCAGCAACTGGGTGGGAAAGGGCTTCTCTGCTGTTTACGAAGCTATTTGCGGTGGAGAGGTGAAGAAAGACAATGGACAGATTCAGTCTCCGAACTACCCAGACGACTACAGACCtaacaaagtgtgtgtgtggaagatCACTGTGGCTCAGGGTTACCACGTAGGCCTTACCTTCCAGTCTTTTGAGATCGAGAGGCACGATAACTGTGCGTATGACTACCTGGAGGTTCGAGATGGGAACTCCGAAAGCAGCCCGCTGTTGGGTAGATTCTGTGGTTATGACAAACCCGACGATATTAAATCCAGTTCCAACCAGCTCTGGATGAGGTTCGTGTCTGACGGTTCTGTCAACAAGGCCGGGTTTGCTGCTAATTTCTTCAAAGAAATGGACGAGTGCTCCAGACCCGACAACGGTCGCTGTGAGCAGCGCTGTGTCAACACCCTCGGTAGTTACAAGTGTGCCTGTGACCCTGGGTACGAGCTGGCGGCGGACAAGCGGAGTTGCGAGGCTGCCTGTGGTGGTTTCATCACCAAGCTGAACGGGTCCATCACCAGTCCAGGCTGGCCCAAAGAGTATCCTCCCAACAAGAACTGCATCTGGCAGCTGGTGGCGCCCACGCAGTACCGCATCACGCTGCTCTTCGACGTCTTCGAGACGGAGGGGAACGATGTTTGTAAATATGACTTTGTTGAGGTGAGAAGCGGTCTGTCGGCCGACTCCAGACTGCACGGGAAGTTCTGCGGAGCGGAGAAACCGGAGGCCATCACCTCTCAGTACAACAACATGCGCATTGAGTTTAAATCTGACAACACCGTCTCCAAGAAGGGCTTTAAGGCCCAGTTCTTCTCAGATAAAGACGAGTGCTCTAAGGAGAACGGCGGATGTCAGCATGAATGTGTGAACACCTTTGGCAGCTACAGTTGTCAGTGCAGAAGTGGCTTCGTtctgcatgaaaacaaacatgactGCAAGGAagCCGGCTGTGATCACGTTGTGAACAGCGTGAGCGGGACCATCACCAGCCCCAACTGGCCAGATAAATACCCCAGCAAGAAGGCCTGCACCTGGGCCCTCTCCACCACCCCGGGACATCGGATCAAAATAGCTTTCAATGAAATCGACATGGAGCCTCATCTGGAATGCGCTTATGACCACATTGAGATTTACGACGGTCGGGATGGCAAGGCACCCAGCCTCGGGCGATACTGCGGCACCAAGAAACCTCAACCGATCATATCCACCAGCAACAAGATGTTCATTCGCTTCTTCTCTGATAACTCGGTGCACAAGAAAGGCTTCGAGGCTTCCCATACTGCAGAGTGCGGAGGGCAGCTGAAAGCGGAGGTGAAAACTAAAGACCTATACTCTCATGCCCAGTTTGGTGATAATAACTACCCCGGGGCGTCAGACTGCCAGTGGGTGATCACAGCAGAGAAGGGCTACGGCGTGGAGCTCATCTTCCAGACCTTCGAAATCGAGGAGGAGGCCGACTGTGGCTATGATTACATGGAGCTGTTTGACGGGGCGGACACCAAATCACCCAGACTAGGCCGTTACTGTGGATCAGGGCCTCCAGAGGAGATCTACTCTGCCGGTGACTCTATCGTCATCAAATTCCGGTCAGACGATACCATCAATAAGAAGGGCTTCCACGTGCGTTACACCAGCACCAAGTTTCAGGACACACTCCACTCCCGTAAGAAGTGACCCCTAGTGGCCGGGAGGGGCCGTGCAGGGCCTAGGGGGAAGCGAAAGGGCCCCAGGGGGAGGGCCTTGCCCCTCGCTCGGAGCCCCCCGGCCACCAAGAACACCCAGACTCGACGGACCAGCCGCAAGAACGCCAACCGCACCTCAGTAGTTCACAGGGGTTCTGGCATCCCCTACTGACTGTGAGGAGTAAAGCCATTCCGCAGTAGACCttgtttttaccttttttttttattattacatttgggGTAAGATGTGGAGGGCGGTGGGGGCGGGGTTGGGTAGGGGTGGAATGTATTCAGTTGCTGGATACCAATAAAGGGGCGAAATCAAATGTGGACGTAATGGCACCAGCATTTGTAATAACTCGTTTTTTCCTGGCCAGTAGTCCAGAAGGTTCCCTGCCGAAATGATCACTCTCCAGGAGGTTTTCCAGAATCAGATATCatattaaaagactaataaacaACACGTGGCCCATGTCTGATGGCTGTTAATTGCTTTTGCATAAAAACAGGATGCTATGGTGGAAAATGCTTAGCTTCTGTTAAGAttaagcacacttttttttcaaggtCTTGATAATTTGGTGTTGTCCTTGTAATACTCAACAATCATGAACAAATTAGGCACAATCGCATGGAAATTGGCAGGACATCCCactgcttttttctttaatcttcCTTTTCAGGCTCTTTCCTCACAGAAGGTGGTTTTCAAAACGTGACTAGTGTAAGGACCTCAGTCAGGGTAATCAGTgtaaaaaaacctcaaaattaGACAAAAAAGAGATAATTCAGGcaataattctgtcatcatttgcttcAAGTAAatgacttgctttcttctgtgaaacaaaaatgaaggCATTTGGAAGACAGTATTTGTCCCTACAATGACCCCAAAACAACTTAAAGTTGGACCCCATCGACTTTAGTTGtatggaccaaaaaaaaaaatctcaaaatgtctttctgtgtgtgttccacagaagaaagaaagtaaatgaTGCCAATCTCGTTTTGGTAAATAACCTCTTCAAGACCTATAACCTATTGCGCAAACTATAACGTTTAATACGATCTTGAGTTAAAACCTGAAAGGACAGTACTTTTCAGCATGGATGTCCTATTGCTAGATAGATGTTGCTCTTACACCGCTGACTATGGGAAAActgttaaaactgtaaaatgttcaCTTGTACCAATAATGTACCTCAGCGTATGGGAGAGCGTTGGGATGGTGCTATTTCAAACGAGTCCTTTCAGTCGCTCTTTCTCTGTTGATATCCAGTGTCAGCTGAGAAAAGAGCATGTTTGATGTCAAATCTGTGCTGAATAGCGTGATCTCCGGGGGTTGATCATTTGATCTAAAGTGTTGGCGCACTCCATTTCCAGGATCATCCCTGTGAAGTGTGCTGCTCCTCACCTCTCTCGCTTTCCGTCTCCTGCAGAACTCCTTCAAAGGCCGTTGACTTGGTCTCCTCTGTCTCAACCGCTCTTTTCATCACACTCTATCATTTCTCACACCTGTTTGCCTTTGTGGATTTACCTAAAGCTCCTTTAAATCTCAGGTTCAGGATATCTGATTGTTGCTACCCACTGAATCATTCCAAGACACTAGACTTGCGGGTTACTCTTTGACTTGGACGTGTGAAATCCAGGAAGGCAAATGATGAGGATTATGGGTTTTAGAGGACACACTTTGggcttttaaaaggttttagaCAATGCCTTCCACCCGAACCTTGAATCAGTTCACCTCAAGCCACGAGTGCTGTGACCAAACAAGTTGCTCAGTATGCGATCTTGCAAGCTTACCCTCATACTCAAGATCGACTAACTTCTATCCTAGTTCTTCAAATGgattatattttgtgtgtctAAGATACCCAGTTTAGCATCTCTGTATTTGAATATGCTTCCTAGCATAGCTTTTTAGAGTAGTGGAGCACTTGTACATTTTGCTAATCGAAGCACATCCTCCTAagcattattaatgtttttaatgcccATGTTATTTCTTGTTAGAAATAGTGTTTTGTGGGCGAATGCGGGCTTCAAATGATCTGTTTTAGCACATGTTACCTCAGCATAAATAGTGTATGCTTGATTTCTTCACCCTGACTGGCCTTCCCACAAAAGACTTGGtacatgtttatgcattttatcatatgtatgtatgtaaatatgtattaatgtattcaAAGTTCACTAAACCATAGATAACTTGATGAGAACTAAGGCTATGTGTAATTGCAGACAAaagatgcaatttatttatattgtatagcTAATTTTCACCTATGTATTGCAAATAGTGTTAACAAGTGCTTctatttcataaaatgttattttcattttgaaa

Function

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048264 determination of ventral identity biological_process
GO:0006508 proteolysis biological_process
GO:0033333 fin development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K05502 BMP1, TLD; bone morphogenetic protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97735 lncRNA downstream 102033 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 210965 21571117 ~ 21644683 (-) True G66046
TU97708 lncRNA downstream 217300 21603675 ~ 21638348 (-) True G66047
TU97710 lncRNA downstream 217300 21631309 ~ 21638348 (-) False G66047
TU97458 lncRNA downstream 481057 21373243 ~ 21374591 (-) True G65871
TU97789 lncRNA upstream 90965 22010643 ~ 22013678 (-) True G66115
TU97806 lncRNA upstream 145220 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA upstream 145220 22064898 ~ 22068757 (-) False LOC122350973
XR_006251666.1 lncRNA upstream 154009 22073687 ~ 22074471 (-) True LOC122350974
TU97817 lncRNA upstream 373761 22293439 ~ 22295953 (-) True G66131
XM_043247493.1 mRNA downstream 90143 21757675 ~ 21765505 (-) True rab7b
XM_043247487.1 mRNA downstream 103968 21730654 ~ 21751680 (-) False prkg1l
XM_043247486.1 mRNA downstream 103968 21730654 ~ 21751680 (-) True prkg1l
XM_043247488.1 mRNA downstream 103968 21733114 ~ 21751680 (-) False prkg1l
XM_043247175.1 mRNA downstream 126431 21697808 ~ 21729217 (-) True acsl2
XM_043247261.1 mRNA upstream 4034 21923712 ~ 21943417 (-) False kansl3
XM_043247262.1 mRNA upstream 4034 21923712 ~ 21943417 (-) False kansl3
XM_043247259.1 mRNA upstream 4034 21923712 ~ 21943417 (-) True kansl3
XM_043247263.1 mRNA upstream 4034 21923712 ~ 21943416 (-) False kansl3
XM_043247264.1 mRNA upstream 4034 21923712 ~ 21940681 (-) False kansl3
TU97752 other downstream 79028 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1402517 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2422513 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 2422513 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 2653271 19202277 ~ 19202377 (-) True LOC122351133
TU97796 other upstream 94295 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 109054 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 145220 22064898 ~ 22068757 (-) False LOC122350973
TU97809 other upstream 159773 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 162343 22082021 ~ 22096062 (-) False antxr1a

Expression Profile