RNA id: XM_043246370.1


Basic Information

Item Value
RNA id XM_043246370.1
length 906
RNA type mRNA
GC content 0.41
exon number 3
gene id nppb
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23425908 ~ 23427204 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCACTGGAGGATCATACAGACAACGACAAACGAGACAGAAGAGCTGCAGAAACATCAGGAACCATGAAATCAACTGATATTCCTCTAGTCGGCCTTCTATTAATCTTCAGCATTCAGCTCACGGGCGCGTTCCCGCTGCAAAACACAGCATTGACCAACGAGGACAGGGATGTCTTAAAGCTTCTTCTACAGCGACTGGAGGAGACCGTTCCCGCTTCTCCTCAAGAGCAGACACTGGTGAAAgtggaagaagaggaggatgatCCCGAAGAAACCCGCATCGAACCTCAACCCAAGATTGACGCGAGGAACTATCTGTCTGCTCGGGACTTGAGGACAGTCCGGCAGGACTCCAAGAAATATTCCGGGTGTTTCGGGCGCAAACTGGACAGAATCGGCTCCATGTCGACCCTAGGCTGTAACACCGTCGGGCGCTCGGGTTCTAAGAAGTGGTGAAGTCTTAACGATTAGGAGCTTCTACACTGCGAAAACAGTCCAACTTTTAGTGCTGGTATTACTTTGGAGACTTATTTCTACTTGATCTGACCTTACAATGACTTTTGATCGCGTAACCTAATGTATTCAGGGTCGATTTAATCATACTCAATTATTTTTGACATCgacaaaaaaagatgttaacATCGAAGCACAATTTTAGGttacatgacttttttttttttactgtgttacTATGACTCCAGAAATTGTTCTTAaccatgcatatttatttagatatttatttaatttctttaaacagtccagttatatttttatgcatatttaatttaaatgtcattcagGTCAgttgtaataaatgtttacacatgcattttttttctgaaatctttctttctcgtttctttttctccaaAATGTATCTGAACACACGCACCATGAATTtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98171 lncRNA upstream 20596 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 186096 23231564 ~ 23239812 (+) True LOC122350913
TU98170 lncRNA upstream 187655 23237977 ~ 23238253 (+) True G66344
XR_006251648.1 lncRNA upstream 194884 23230043 ~ 23231024 (+) True LOC122350915
TU98064 lncRNA upstream 438950 22984040 ~ 22986958 (+) False mfn2
TU98176 lncRNA downstream 5605 23432809 ~ 23433745 (+) True G66350
TU98180 lncRNA downstream 6914 23434118 ~ 23435033 (+) True G66351
TU98273 lncRNA downstream 188012 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 193723 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 249230 23676434 ~ 23681832 (+) True LOC122350145
XM_043247581.1 mRNA upstream 2246 23422672 ~ 23423662 (+) True nppal
XM_043247710.1 mRNA upstream 15347 23403713 ~ 23410561 (+) True LOC122350936
XM_043247681.1 mRNA upstream 24346 23054616 ~ 23401562 (+) True prdm16
XM_043247463.1 mRNA upstream 438746 22973995 ~ 22987162 (+) True mfn2
XM_043247808.1 mRNA upstream 456935 22956869 ~ 22968973 (+) True plod1a
XM_043246265.1 mRNA downstream 1711 23428915 ~ 23430926 (+) True nppa
XM_043247716.1 mRNA downstream 19987 23447191 ~ 23456783 (+) True mthfr
XM_043246658.1 mRNA downstream 55691 23482895 ~ 23579462 (+) False plch2a
XM_043246655.1 mRNA downstream 55692 23482896 ~ 23583377 (+) False plch2a
XM_043246657.1 mRNA downstream 80287 23507491 ~ 23583377 (+) False plch2a
TU98168 other upstream 273961 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 440324 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1305112 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1308074 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1461350 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 205179 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 325364 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 326257 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 326257 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 328487 23755691 ~ 23783631 (+) False acot7

Expression Profile