RNA id: XM_043246396.1


Basic Information

Item Value
RNA id XM_043246396.1
length 7859
RNA type mRNA
GC content 0.45
exon number 40
gene id prex1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12363786 ~ 12425996 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCTCTCTCTTCAGCTCTCGCCACCGTCTCACTTTTCATGTAGTCCACACTGAGCTCTCGTGAACGCGCTACTTCGGCTTTTACAGCACGGTTTTGCCAGTGGTTTCACGGTTGCTGCTCGTTTCACGTGCACTCCATTTTTCGCATCATTTTGCTCCTCTGGCCACTTTCATCATTTATGCTGCAGGCGGCCGGTGGGCTACTTCTCCAGTTTACCTTTTAAACGGAAACCGTTTTAATGAGATGCAAATTGCTTTGCTGTTGACTTCGATGTTGCGCGTCGCTACTTTTACAGAAGTTTCTTCAGTTTCAATATAACATTTCCCCTGCCGCATCCTGGCGCGAGGTTGCGTGCGGCGCGCGAAGGATTAAATGGATTAATTATCGCATCTTCACATCAGTTTTCACACAACTGGCGTGCACTCTTGTTTGTTTGGAGACTTCTCTCTCTAagggttttttaaaaatgagccaAATAAACACCGAGGAGGACAGTCAGCAAGAAAACGGGGACCTCAGCAGCAAGGACTCGGACCGTCAGCTTCGCCTGAGACTGTGCGTTTTAAACGAGATATTGAACACTGAACGGGATTACGTGAGAAACTTGGCTTTTCTGCAGTCGGCCTTTCTCCAGAGAATAAGGCAGACTGCAGAAAACCAGCAATGTCTTACTCCAGAGCAggtcaagATCCTGTTTTCCAATATTGAGTCAATTTTGGAAGTCCATTGTGATTTTCTTTCCACTTTGGATGCCAGTTTGCAGCCTGAACCTCAAGCACACCAATCTCTCGGCCATGTGTTTCTCAAGTTTAGGGACCGTTTCTCTGTATATGGCGAGTACTGTAGTAACCATGAGAAAGCACTCAGACTACTGATGGAGCTTAACAAGATCCCTCACGTACGGACTTTTCTGCTGcacCTCATGTTGTTAGGAGGAAAGAAGAGCACAGATGTTCCTCTTGAGGGGTATCTCCTATCTCCCATTCAGAGGATCTGTAAATACCCTTTGCTACTGAAGGAACTTTTGAAGAGGACCCCTAAGAAGCATTCAGATTACCCGGCGGTGGAGGAGGCCCTGCAGGCCATGAAAGCCGTGTGCTGCAACATCAACGAGACCAAGCGACAGATGGAGAAACTAGAGGCACTTGAGATATTGCAGTCACACATAGAGGGCTGGGAGGGGACGAACTTGACTGATATATGCACCGAACTGTTGCTCCAGGGCAACCTTTTAAAGATATCAGCTGGAAATATCCAGGAACGGGTCTTCTTCCTGTTTGACAACCTCCTGGTCTACTGCAAGAGGAAGTCCCGAGTGTCTGGGAAGAAATCCACCAAAAGGACGAAATCCATCAACGGGCCGCAATACGTGTTCAGAGGCCGCATCAACACAGAGGTCATGGAGGTCGAGAATGTGGAAGATGGAACTGCGGACTATCACAGTAACAACTACACAGTGACCAATGGCTGGAAGATTCACAACACGGCCAAAAACAAGTGGTTTGTGTGCATGGCCAAGAACGCTGAGGACAAGCAGAAATGGCTAGACGCCATTTTAAAGGAACgtgaacagagagagaGTTTAAAGCTTGGGATGGAGCGTGATGCCTACGTCATGATCgcagagaaaggagaaaagctGTACCATATGATGATGACCAAGAGCCGCCACCTCATCAAAGACCGCCGCAGGAAACTCACCATTGTACCCAAGTGCTTCTTGGGAAATGAGTTTGTCTCATGGCTCTTGGAGAGTGGAGAGATCAGTAAGGCAGAGGAGGGAATCAACCTGGGTCAAGCTCTCTTAGAAAACGGCATCATCCATCACGTGTCAGATAAACATCAGTTCAAGAACGAGCAGGTGTTGTATCGCTTTCGATATGATGACGGCACCTATAAAGCCAGAAGTGAAATGGAGGACATCATCTCAAAGGGAGTGAGACTTTACTGTCGTCTACACAGTCTCTTCACACCTGTTATCAAAGACAGAGATCATCATTTGAAAACCTTTAAATCTGTCATACCAGCTAGTAAACTGGTGGATTGGCTTGTGTCACAGGGCGACAGCACAACCCGTGAAGATGCAGTGACCCTTGGTGTCGGACTCTGCAATGCTGGTTTCATGCACCACGTTCTGGAGAAAAGCGAATTTAAGGATGAGTCACAGTTTTTCCGCTTCTACGCCGATGAGGAGACGGAGGGTACGAGCTCCAAGAGTAAACAGCTTCGCAGTGACTTCAAACTCATCGAGAACATCCTTGCCAAATCCATAGTGATCCACCCGGAAGAGGAGGACTATGGGTTTGAGATCGAAGAGAAGAACAAGGCCATCGTAGTGAAAAGTGTGACCAGGGGCTCATATGCAGAGATGGCAGGCCTGCAGTCGGGTCGAAAGATATACTCCATTAATGAGGACCTGGTGTTTCTAAGGCCTTTTTCTGAAGTGGAGACCATGATCAACCAGTCCTTCTGTATACGTCGCTCACTCAGACTACTGGTGGCCACCAAGAACAAAGAGATTGTGAAGATGCCAGATGTTCATGGCACTCTTCCTTTTGTTCTCTGCGGTTCTTGTCCACCTTACGTTCACGCAGTAAAGAAAGgctctgaggcagcagcagcaggtctTCAGCCCGGTCAGTGTGTCCTTAAAGTCAACGGCAACAACATGAACCAGAGCAGCTACCAGGAAGTCCTGGAGCACTTCAGTGGCCATCAGCCTGTCCTGGAGCAGCAAGACACTAGCTGTGGTCAGTGGGCGTACCGTGTATATGAGGATGTGGACGAGCAGATGTCTTTTAGGGGGTGTGAGAATGGCTCAGATTCAGAGGACGGCTGCACTAATGGAAcagGCTCCGTAAGAAGGCTGGAACTGTTGTCCATCTCTGACGATGTTCCTTCAGTCAGTCTGAATGTGGATAATGTTCATGTGGAGCATGGGGTTGTGTACGAGTACGTCAGCACAGCAGGAATCAAACACTGTGTGCTGGAGAAGATGGTGGAACCCAAGGGCTGCTTCAACCTTGCTGCAAAGATACTAGAGGCCTTTGTGAAGGACGACAGTCTGTTTGTGAAAAGCTGCCGGCATCTAATGGCTCAAAATGAGAAGGTGGTGAGCATGCCACAGTTTGAGTTTCGAAACATCTGTGACACCAAGCTGGAGAGCATAGAAAAACGCATTTGCAGCTACAAACAGTTTGTGGACGAATTGCAGGCAAAGGCCTGGCCCACGTTTAAGCAGGCGAGCACAAAACCTCATGTTCTGGGCTACATGGACTTTGTCCCCACCAACTGTCATCTGAACCTGATGCAGGTGTCCTGCCCAAAGAACACCTCCTCATCAAGCCGAGCCTTCAGTATCCGCTTCGGACGCAAGAACTCCTTCTTTGGGCTTGATCCTGATCAAGCTCATTTGAATCCCATGTCCCATGCCGTGCATTGTGTGACCAGCATGGCGGCCCCCTCCTGGAGTTGCCTGAGTTTGGATGAAGAGACGGAGGAGGGCGAAGGGAGCACAGAGGACGGAAGGAAGCATGAAGAGGGAGGTCTCAGCTTCCTCCTCAAACAGGAAGACACAGAAAGACAGGATAATTACATCTGCCTCTATAACCGCCTGGACATATCAGTGCGTGAAATGAAGCAATACGTGGCCCAGATAGATGTACTTCTGTCATCGATAACTGGACCGACGCAGCCGCAGGGCTCAGAGCCACCCTCATTTGAGAGCGCCCCTTCAACCTCTCCCATACCAGAGGAGACGGACCAAGACAAGACAGAGCATGGTGGGAACAAGAGGGTGTGCTTCAAAGTCAACGAAGATGATCAAGAGGATTCTGGACATGACACAATGAGCTATAGAGACTCATACAGtGAGTGTAACAGTAACCGAGACTCAGTGCTGTCATACACCAGCGTCCGGAGCAACAGTTCTTACCTGGGCAGTGATGAGATGGGCTCAGgAGACGAGTTGCCATGTGATATGCAGATCCCTTTAGACAAGCAGGATAAACTTCACGGATGTCTGGAACACCTTTTCAATCAGGTTGACTCGATCAACAGTCTACTGAAGGGCCCTATCATGAGTAAAGCCTGTGAGGAAACCAAGCATTTCCACAACGACCACAGTCAGCCAGAGTTTCGACACACGGATGACTGGACTGCACGTTGGCGGTACGTCTTGCACAAGAATATCCAGGAGGACCCTTGGAATCTGCCCATTTCAATTAAATCTTTAGTTAACAGCCTTCATCGCTTTGTAGAAGACGGAAGGAGTCAACTGTTGTTGGCGCTGCTTAAATGCACTGACACAGAACTCCAGTTGCGGAGGGATGTCATATTTTGCCAGTCTCTGGTGGGGGCGCTGTGCGCATTGGCAGAGCAGCTCGTGAGTGCCCTGAACCTGCGTTTTAACAATAACGGAGAGTATGAGGAAGACAGTAAAGAGGTCAGCCGGAAATGGCTGGAGCAGATCGCCACCATCGGAGTGCTCTTTAACTTTCAGTCAACACTCTCTCCACACGTGAGAGAGGAGCGAATCATGCTGGAAGATACAAAAGCAGCACTGCAGGATCTGGAGAAAGTCACTGTGCTGTTCCGCCCACTGGAGAACGAGTGCCTCGTCCCAAATACATCTGTGCATTACCAGGTGGAAGGCAGTCGGCAGGCCATCAGGGTGACAATGTTCTTGGACAGCTGTCATTTTAGTGAGCTGCCAACAAGACTGCAGAACGGAGGCTCTTTAAAGCTTCAATCAGTCCTCTTCACTAGAGGGCTGGAGAAGCCAGAAGGTGTGTTGTCTCAGGATTTTGTTGCAATGGAAGAGTTTCAGCAGCGCACAAACGCTCTGTCACTGGAGAAAGTCAAAGGTTATTACCGCAAACTCAGggCTTTTTATCTGGAGAAATCAAATTCAGACTCAAATTCTACTGCAATGAAAATAGACCAGCTCCTCCGGCCGCTTAACACCTTGGATGACCTCTGCCGGCTCATGCAGACGTACATGAATGTAAAACCCGGCTCTGCGGGTCAGCCCTCTGGAGTCAGTGTTCTTGTGGTGTCTTCCGAGCTCTGCAACCGGCTGGGAGCCTGTCACATCACCATGTGTGCCACTGGGATGCAGAGGTGTACTCTGACTGTGTCACTGGAGCAGGCCGTCACTCTATCCAGAAACCATGGCCTCATGCCCCGCTGTCTAATGCAGACCATGGACATCATGCGCAAACAGGGCACCAGAGTGGAGATTTCTGCCAAAAATCTCAGAGTAATGGATCAGATGCCACCAGGTGCTCCCAGGCTCTTCAGGTTGTGTTTACCCCCATCCGATGGAGATCTTTGAATGAGGTGATGTCTGTCTCTCAGACCTTCTAGATGCTGGGAGATATCATGACTGGCTTATCATTTTGAGACTATGCCTCAGCACATCTCAACTCCCGGCCAGCCTCATCCCGAGAGGTCTGGCTGAGGTCAATACGACGAGGAACGAGAACTGTCCGACCACCTTTATCTCCTGCTCCGGCAGCTGAGAAAATCGCTAATGCTAACGATGCTAATCTTGGCTAGCAGTGTCTGCCCACATTGCTGCATTGTTTGGTCTCCTAATGGATCTGGACTGGCATGTGAACGGCTAAATCTAACTGTAAAAGGATGCGTTATCTCTTCCTTTTGCCTCTGACTGCAATCTTGCATCAGCAAGCAAGGGTGGTTTGGTCTGGACGGCGACGTTAAGTTCAGATACGTGGTGATTATGTGCAATTACTGTAGCTTAGCATGCATGCGTCTGCACTGTGTCATGGGAGGTGGTGCCCTCAGAGAGCTGTTGCGATTCTCTCACTCATATCAGGTATTAAGCAAGTACTGAAATCATTCCAGCCTACACGGACCACTTTCAAAATCTTAATTCTCGTCTCTGTCCTTGTGTTTAAAATTCGCTTGGTTCTCaattttattgtgaaattatgGCAATGGCTCTTTTTAAGAATAACAGGGAAACGGTTGGAGGCCGTAAGCTTCTCAACCAATACAAAAACATAGGCCTGCGTGCAAAATACAGCATTTCACTGCAATCAAAATGCTGATATCGAAGGTCGAAAACCATTATTGATCAACTGGGAGAAAACAAATGGTGTATAGCACTTTTTATTCGTGAATCAATGCTGTCTTACAGTGCGTGACTGTTCTGGGGAACTGCTTTGGGCGGCTGTTTGGAaaagcacaattaaaaaaaaaccgcTTGTGTTCTTCAGTGTTTGTTAAAAGTACTGTACATTGTAGAAGATAAAGAAACGCAAAGGGATCATGTGAAGAATCAATAGATATAGTAGGATTTTATTGAAGTTTTGTATTtaggtaaatatatatgtatgtatcagAGGGATAAGCATATGCTCTTTGGGAACAGCAGTGCTATAATTTAAAGagtattaataatgttaaaacatataatattgTACATCTTTCATTTTGTATACTTAGTGTATATTTGGATAGGAGACTTTATTGTGCTTTTACACATCGTGTTcgctatttaaaaatctaacttCAGCTGTGCGGTCAGTAACCGAGAAGGCCTGGAATTAGTTCCTGGATTAGTTTGAGctagtatgtacagtatgtgacagcttttgtaacATGCAAAGtctgcatttcattttcatatatatatattgttatacaCGTTAACATGGGCAGTCCTGACAGTTGACCGAATTTGCTCAAATTCGACAATTTTAATgacgatgcaaaaaaaaaaataaaaatttgagtAAATAAGGTAACTCTAAgtgacaataatgcaaaaaagcaTTACGTCTTAATGAAATCTTAATGAGATGTTCACAGTGTTTGTATTGTAGCTCATAACATGTCACTGTCTGTTACAAATCAGCATGGAAGTTAGACTCTTAAAAccatgataaaatattttaaactatacttgaatttatgctaatatatagtatgtttttttttctccttgtaTCTATCCAAATTGAAGCCTAGTGTTggtaaaatgctgatttattttttaattggattttaacattttatttggtcttcaaatggtttttaaactggaaacaagtgtttttaatcCGCAGAATCTGTGCAGTATGACTATTGTATGTTTTGAAGGTCCTTGTTGTTGCttgttattatgttttataatgtcCATCATTTCTGTATGATAGACCTAAATCTAGTAAAACCCAAAGAcgtagcattagcattagcatgttCCTATCACTGTATATTAAAATCTCAGGTTTCTGCACCATCTCGGTCCATTTTTGTGCGATTAGCTGCCCCTTTAAAGTTATGACTGAATGATTTAACATCACTAATCAGTCAGCTTAAACACGGTATgcttgtatgtttgtttttactttaaactacTCTCCTGTTTTTtgactattttcattttattgttgctatttttttagcttcttgTCTCAATTTCAAGTGGACTTTTTAGCTCAAAGAGCGAAAAATATTCAACGGTGCTTGCAAATCAAGCCTTTCTTGTGAGGGCCTTGCAGTTTCTTGGTCTTTACCtcctatttctttctttttttctttcatttccaaattgttttcttaattttacaAATCCTGTTGCTTTCTATTAATAAGAGCAGTTTAATCAAAACCTCACTGGTGGCGTGAAGTAGATCTAATCTGCATCTGCAAATATTTAACTTATAGTTTATATTGATGTTTGACTTAATGTCTCTGTCTTTATGCTGTCCTGACCTGTTCatgataaatacattaaatggcTCTTAAACTTATCTCGCTGGTAATGTAAGCATGTATCCAGTTGTTTTTAACTCGGTGTTGAATTAAAAGCATTGTATAAAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93879 lncRNA downstream 26592 12336876 ~ 12337194 (-) True G63408
TU93878 lncRNA downstream 26963 12336114 ~ 12336823 (-) True G63407
TU93877 lncRNA downstream 27765 12335766 ~ 12336021 (-) True G63406
TU93874 lncRNA downstream 29181 12332456 ~ 12334605 (-) True G63404
TU93864 lncRNA downstream 59457 12302728 ~ 12304329 (-) True G63395
TU94000 lncRNA upstream 30053 12456048 ~ 12458857 (-) True G63486
TU94006 lncRNA upstream 64282 12490277 ~ 12491882 (-) True G63490
TU94009 lncRNA upstream 73763 12499758 ~ 12504153 (-) False foxp3a
TU94134 lncRNA upstream 222647 12648642 ~ 12649214 (-) True G63578
TU94135 lncRNA upstream 224288 12650283 ~ 12652814 (-) False G63579
XM_043246419.1 mRNA downstream 682 12344614 ~ 12363104 (-) False kcnq2a
XM_043246416.1 mRNA downstream 699 12342160 ~ 12363087 (-) False kcnq2a
XM_043246497.1 mRNA upstream 4430 12430425 ~ 12438331 (-) True stk38a
XM_043246498.1 mRNA upstream 4430 12430425 ~ 12438290 (-) False stk38a
XM_043246440.1 mRNA upstream 37042 12463037 ~ 12478692 (-) True sema3ga
XM_043246478.1 mRNA upstream 58456 12484451 ~ 12489040 (-) False tspy
XM_043246477.1 mRNA upstream 58456 12484451 ~ 12489040 (-) True tspy
XR_006251575.1 other downstream 691 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 99253 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 566584 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 584535 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 799381 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 1383433 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2298213 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2353536 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 2857866 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 3223231 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile