RNA id: XM_043246406.1


Basic Information

Item Value
RNA id XM_043246406.1
length 3720
RNA type mRNA
GC content 0.56
exon number 18
gene id magixa
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11351304 ~ 11392671 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcctctcctcccctcCGCTTGGCTGCCTTATCATCGCTTCCTTATTGCCAAACCTGCAAAGACAGGGCTGTACTGAATGCAGCGTAATTTTGACCCATGTTCCATTAGCTGAGCGGCCCTGAGGGCACGAGGCTTCCGCGCGGGACTGTAATGCTACACTGTCCTCCCTCTCCGGCCACTTCATCCTCAGCAGCGCAGAGCTATGGACCTCAAACCGTAGTGCTCTTCCAACACAGCGTATCTGCAGTCACCTGCGACTCCAATAGGCAATCAATATTGATAGAGTATTGTTAAGGATTACAGCCATAAGGCGGTACGTCGCGGGGGGGAAGGCTGGAATTATGAAGcgCGGTCAACATGTCTAAGGCCACTGTTAAGAAGCTGCACTGGCGCTCGAAAGTGCAGGAGAGCTTCGTCCCACTGGGCGGAGCCTCGGGGGAGCTTGGTGTGGCCATTGGAGGTGGTGCAGATTATGGAGAATTCCCATTTGTTACAGCAGCACCTGGGGGTGGAGCCACTGTTGGTGACATCATTTTAGAGATCGGCGGTACACCTGTCCTGGGATTGACCTTGGGAGATGTGAGAGGGGTTCTGAACTCATGTCCACATCCAATTCGGATCAAAACCGTTTCACCAGGCTCGACTCTCTGCAAGGATCTGAGACTTTACCTGAGCAAGTGTTTTACACCCGGATCCATGGACAGCCAACTCCAACAGGTCATACGAGAGAACCTCTACCTGCGCGCCGTGCCCTGTACGACCAGGCAACCACGGGATGGAGAGATCTCAGGGGTGGATTATAACTTTGTGTCTATCGAGGAATTCTTCTCCCTGGAAGAGTCTGGAGCCCTGCTGGAAAGTGGGAAGTTCAAAGGGAACTATTATGGCACACCTCGGCCAGTCCACATCGGTCCTGACAGCCCCCCCATTACATACCAGGAACACCGAAATCTCCTGAGGAACTTCCGTACCCGTAGCAAATCACTCAGCAACCTGGAAAAGGCGGTGGAGGAAGGAGACAACAGTGAGGAAGACTCTGGTCTTTCAGCGGGGTCTGCAGGAGCCAGCAGTGCCCCTCCCACCACCATTGTCTCACCTAATCAGACTTGGGATTCAAGCGGTGGGCGGGATGGAGGGGTTGCCATGGAGAACGGAGCACGTGGAGGGGCATTGCCTGAAAACTGGGAGCTGGCGTTCAGTGACACGGGTGAACCCTATTACATCAACCATAACTCAAAGACCACAAGCTGGCTGGACCCAAGGACTCAGGGCAAAGAGATTGTCAGCAAGACAGAgttACCTGCATTCACAGACCAACCATCTGAACTGAAGGGCTATTCCATACACACCCGCCTGTCGAAAGGGCCTCGTGGGTTTGGCTTTAACATAGTGGGTGGCAGCAGACCTCGAGAGTTCCTGCAGGTGTACAGCGTCACCCCTGGAGGCCCGTCTGCACTCAAAACAGcggACATCCTAGTGTACATCAATGACTCATGTGTGCTGGGTCTGTCCCATAAAGAGGTAGTGGAAATGCTGAAATCCGTCCCCATGGGTCACAGTGTGGACGTGGTTCTGCGTCGAGGTTATCCAATGCTCTACAACCCTGATGGCTGTCCCAAAACCAGCCTCTCCTCCACTTCTGACCCAACAGGCACCAACCCTACGGCCCCTGGATCTGCTCCATCCCAGGTCCAACATCCTGATGGACACCAGCCTGGCTTGGTGAACTTAAACCGCTCCATGTCCCACCACAACAACTTTTACCCCCGCATGCAGAAAGAGTCTTTGGATGCTAATGGAAACACAGCACCCCAGCTTTCATACGCGATGGCCAATGGAAATGGAGTGGGAGGGACTATAGGGATGGGGGTGGTGAATTCTTCAAATGCCCCTCCTCCATCAGAGCGGATGAGCTCCAGTCATAGCGATACGGAGGTCTGCTCTGTTGTCACGCGCAGAGCTTCTCTTGTCCGAAGCTACAACAACAACACTCTTCCAGCTCCTTCTCACGTCCATCACAGTTCTAAGTCTTCCGAGAGCGATCTCTCCTCTGCTGCGCTCCCGCTGCCCCAGCCTGAGGTGGGTCCTACCGTCCCGCCTGGAGCGCCCAACACTCAGCGGCCTCCAATGCCCCAAACATCTCTTGCTGTTGCACCCCCAACCGAGCACCCACCCTGTGGTTTCAATGGGTGTCCAGCCAACAATCCCCCGCGACCTCTTCCGGGTGGCCTTGGGTCCCCCGGAGCCCCAGGTGGGGTAGGCTGCGGGGGAGGTGGTGAGCTGGTACCTGTGGCCTTGGGCAGGAGTGAGGGAGGGGGTATGGGTTTCAGTGTGACGGCTGGGGGGCAGGGAGGGCAGCTGGCGGTGGTGAAGAGAGTTTGGGACAGAAGACAGTGCCACTCCCTACAGCCAGGGGACgccattattaaaatcaatggcGCTGATGTGCAGAGTCTCAGTTTCGCACAGGTGCAGCGAGTGCTGCAAGAACATACCAAACAGGGTGAGGTGGTCTTACTGGTTTACAGAGGAGGTTCTCTTTGTTCCCCAGGCTCCCCGAATGCCTATAAGAGACCTCCTCCCTCCCTGGGCACCCCTGATCTGACCTCGCCCTCCTCCGATGGTGCTGTGCCCAGCCAGAGCACCCTCTCTCCCTCCTCGCCCTGCGCTGATCTCCCCAATCTGGTCCAAAGCACCAGCTTCCTGGACTCAGTGCCTGTGACCCTGACCCTAGAGCCCCGGGACTGGATAGGAGTTGAGGACGGACCTGCTCAGTGGAGCCGTACTGCTCCCTCTAATCTCGGCGCAGTATCCAAAAGCCATGTAGATACAAGGGGAGCTATTTCTTCCAGAGCAATGGAGGTGGAGTTGAGACGGAGACCAGGAGAAGGATTTGGGTTTGTCATCGCATCCCAAGACGTAATGAATGGAAccTCGTCTCTAGTGTCTCACCGGTTTGTGACGGTGCGGCGGGGGAGCCCAGCAGCACGCAGTGGTCAGATCCAGCCGGGGGATCAGCTGGAGGCGGTGGAGGGCAGATCAGTGGTCACACTGCCTCACAGGGACCTCGCACAGATACTGCGCAGAGCCGGCAACACACTCAGACTCACCATTATACCACGCTCTCACACTAACAATAATCTACCTGAGTACCCAGACTTTGATGCTGAGAGTCGGTTAAGAAAAGGGCATCGGGCTAAGCAAAAGGATTCCCAGTATTACAGTGTTGATCTTGAGAGGGGTCCAACAGGGTTTGGTTTTAGCTTGCGAGGTGGAAGCGAGTATAATATGGGTCTGTACGTTCTCGGTCTGATGGAGGGTGGACCGGCCTCACGCAGTCAGAAAATGCAGGTGAGCGATCAGCTCGTGGAGATTAACGGAGACAGCACAGCTGGGATGACACACAGCCAGGCCGTGGAGCAGATCCGAAAGGGAGGAGCCCGGATACATCTCATACTGAAGAAAGGCAATGGATACGTAGCGGATTATGTGGAGCTTTCCAGCTTATCTCTTTGTATGACTAATTCGAAGCAGGGCGAGCCTTGCTTCTATGTCATCGGCCGGACAGAAAACACGCGacCATGAAGCTGGAGCCGTTTCCCCCTCCTCCCTCTTTTCCGAGGAGGCTACAGTGGATCGCTCTCTTTCGAGGAGCAGCAGATGGGTGGATGACAGCGGacaagagaggagagagaggagggggaaGGAAAGGAGGGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93256 lncRNA downstream 80261 11276359 ~ 11276914 (-) True G62992
TU93238 lncRNA downstream 147014 11201695 ~ 11210161 (-) True G62977
TU93235 lncRNA downstream 151802 11197153 ~ 11205373 (-) True G62974
TU93215 lncRNA downstream 187702 11131670 ~ 11169473 (-) True smim1
XR_006251671.1 lncRNA downstream 532124 10819217 ~ 10825051 (-) True LOC122351000
TU93312 lncRNA upstream 14283 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA upstream 40110 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA upstream 40110 11432781 ~ 11441818 (-) False G63014
TU93299 lncRNA upstream 45075 11437746 ~ 11441996 (-) True G63014
TU93371 lncRNA upstream 130351 11523022 ~ 11523638 (-) True G63065
XM_043246617.1 mRNA downstream 11187 11284354 ~ 11345988 (-) True LOC122350269
XM_043246231.1 mRNA downstream 100667 11250881 ~ 11256508 (-) True porcnl
XM_043247990.1 mRNA downstream 106592 11235474 ~ 11250583 (-) False csde1
XM_043247378.1 mRNA upstream 52602 11445273 ~ 11451446 (-) True emilin3a
XM_043246486.1 mRNA upstream 88973 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043246480.1 mRNA upstream 176877 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA upstream 176877 11569548 ~ 11575195 (-) True ptk6a
XM_043246446.1 mRNA upstream 186491 11579162 ~ 11615271 (-) True nol4la
TU93259 other downstream 11317 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 225968 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 366471 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 816884 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 878490 10440764 ~ 10478685 (-) False G62826
TU93421 other upstream 169607 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 169607 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 169607 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 385600 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 404459 11797130 ~ 11797202 (-) True trnaf-gaa_1

Expression Profile