RNA id: XM_043246415.1


Basic Information

Item Value
RNA id XM_043246415.1
length 3894
RNA type mRNA
GC content 0.47
exon number 16
gene id kcnq2a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12342160 ~ 12363104 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGGGAGCCGGAAGGCGTAAAGATAAAGGACTACCCATTGCAGTTTCGCCTTAGCGTTTCAATTGGCTTTTAGTACGAGACCACCGCACTACAGAACACACCCCGGTTCGGCGATGTCTGCCCACGACTACTTTATACACTCGTTTGGATCTGTCAAACTGTAAGGATGGTGAAAAAATCCGCCAACGGTGAAGTTTATCACCCTCAGGCAGGGGAGAAGAAACTGAAAGTCGGCTTCGTGGGACTGGACCCCGGGGCTGCGGAGACGAGCCGAGACGGGGCACTTCTTATCGCCGGTTCCGAGAGCACGAAACGGGGCAGCATCCTGTGCAGACCGAGGTCCAGCATCTCCAGGGGGAGCGTCGCGCACAAAAGAAACGCGCGTTATCGCAGACTGCAAAATTTCCTGTACAATGCGCTGGAAAGACCCCGCGGCTGGGCGTTCATTTACCACGCTTATGTGTTTCTGCTGGTGTTTTCCTGTCTGGTTCTGTCAGTGTTCGCAACGATCAAAGAATACAAGAAAAGCTCCGAGAGTGCCTTGTACATCCTGGAAATTGTGACAATCGTGGTGTTTGGTGTGGAATATATTGTGCGGATTTGGGCAGCCGGCTGCTGCTGTCGCTACAGAGGATGGAGAGGAAGGCTGAGATTTGCACGCAAGCCCTTCTGTATCATCGATATCATGGTCCTTTTTGCATCGGTTTCTGTGCTGGCGGCTGGCTCACAGGGAAATGTTTTTGCCACCTccgccattcggagtctgaggTTTCTTCAGATCCTTCGAATGCTGCGCATGGACCGCCGCGGTGGCACATGGAAGCTCCTGGGATCTGTGGTTTACGCACACAGCAAGGAACTCATTACGGCATGGTATATTGGATTCCTTTGTCTTATCCTGGCATCTTTCTTGGTGTACTCAGTGGAGAAGGATGACAATTCAGAGATGTTCGAGACCTACGCAGACGCCCTCTGGTGGGGGCTGGTAACTCTTACAACTATCGGTTATGGGGACAAGTTtcctgtcacatggaatgggcGTCTAATTGCTGCCACATTCAGTTTGATCGGTGTAGCTTTTTTCGCTCTTCCTGCGGGTATCCTGGGCTCAGGATTTGCTCTGAAGGTTCAAGAGCAGCACAGACAGAAGCATTTTGAGAAGCGTCGTAACCCTGCAGCAGCTCTTATCCAGGCAGCTTGGAGATTTTACGCTACAAATCTTTCCCGGACAGACCTGCTGTCCACATgggacttttatgagcagactGTGTCGGTCCCAATGTACAGACTCATCCCTCCTGTAAACCAACTCGACATATTAAGAAGCCTGAAGGGAAAATCTGCTTTCAGGAAGGACTCCCAGCTAGAAGTCACTCCAAGTAGTGAGATTTCACACAAAGACACCCTGTGTGGGTGCTGCCCGAGAAGCAATAGTCGTAAGCCCAGCTTGAAAGAGAAAGGCAGTCCCTCTAAGAGCACCGGGGGGAAGGAAGCCAAGACCCCCAAGGCAGAGGAGGGATTCAAAGAGAGTCCAAGCAAAGTGACCAAGAGTTTAAGCTTCACAGACCGGAACAAAGCAAAACAGGCTTTCAGAATGAAAGATGGAGCTTCTCGGCAGAACTCTGAAGAGGCAAGTCTTCCGGAAGATTTTGGGGATGACAGAGGTTTTCCCTGCGAATTTGTGCCGGATCTGTCTCCGGGACTAAAGGTGACCATCAGGGCAATCTGTGTTATGCGGTTCCTGGTGTCTAAGAGGAGATTTAAAGAGAGCCTCAGGCCTTATGATGTGATGGATGTGATCGAGCAATATTCAGCAGGCCATCTGGACATGCTGTCACGCATCAAAAACCTTCAGTCCAGAGTGGATCAGATTGTGGGAAAGGGAGCCGCAGCGGGAGAAAAGGACAAGCCCAAAAGCGACACAGAGATGGCTGAGGACCCAAGCATGATGGGACGTCTAAACAAGATGGAAAAGCAGGTAGGGGCAATGGACCTCAAACTCAACTTTTTGGTCAGCGTGTACACCACACATATGGGCATCCCACGATCTGAGACTGAAGCCCTCCTAGGCTTTAAAATCCCTTACCCTGCTCCTCCCTACCACAGCCCAGACGATAAGAGCGAGAAAGCACAGGACGAGAAAGAGGATGAGAATAAAAAGAGTGTGTCCCCTGTTTATCCCGGTCTCAACGGGACTCCCACCGAAAGCCAGTGTCGGCCCTCTACCTCATGGCATCAGGATGACCATCCCCTCAGTGTGCCTCTCTGGAACAACAGTCGAGGAGTTTCGCCAATAGGCACGGATGACCCCTCACTGTACCGTATCCCGCCTCCGCCGTTCCATGAGAACGGAGACAGCAGCCGCTCACGTAGGTCCAGGAGACCCGTCCAGCAGCAGGCGGCCGTCGAGAGCGACACATCCCTCTCCATTCCCTCGGTGGACCATGAGGAACTAGATCGCTCTTTTAGTGGCTTTAGCATTTCTCAGGCCAGGGAAGAGGAATATGTGCCTCCCGTTAGTCTGGGGCTTTTTGGCGGAGGCGGCGGGACACTGTGCACCCGTCTCAGGCCTTATCTGGCCGAGGGGGAGTCGGATACGGACTCTGACCTCTACACACCGGGAGCGCCGTCCCCTCTCTCGTTTACCGGAGAGGGGCCTTTCAGTGACAGGATGTGGCCTGGTCTGAAATAGTGTGGAGTTCATTGTGCGGACCAATATACTGGATGTAGCTGATGGATGTGTATGTGGCCATTTGGACTTGACGGAGTGAATCGTTTTTAATGtcgaaaaacaaaaatgtgggAGTGATGCCACAGCGGCAAGACAGAATCATAaacattgcaattaaaaaaacatagaGGCTAAGAATGTGTGCGTTCACAAGCAGAAAAGATTGTGTGTATTCAATTACTGGCATGGATCTTCAAATCAAAAAAGGCTCCTCTTCTTTATTAGTTTGCGTAGTCACAGTCACAGCTAATGCAGTATCCAGTGCACTTTAccttaaaactgtaattttagtttatgagatatttatttatttatttacattgtcttttcctgaaatgttttatgagaCTGTTATGAAAACGAGTAGTTAATCAGGGCATGTGTTCGTAGTAAgcatttaatgaacattttaaattgaaaggTTGCTTTGGAGAAAATAATTTCAGCCAAAGAAAAAGACGACAGAAAGCTGAGCATGCCTTACAGGTACTCTTTCCCTCTTATATATTTCTTATCAGTAGGATGGAaagatgaattaattttttatagcTACATTTAAAGTCAAAGCACTTACGGAGAGAGACACATACTTTTGGAGGAACTATTAATATTTGCAGGAACCCTGGTGATGGTTAGAGGAGAAATATCCACGCTATTGTATGCAATCAGTTTTCAATTTCTAGAATTGGTAACCTGCACTATGATATGTTTTATGCTGTAGCGAAGAAGGCACTGAATAATAGTCAGAcctaaaaacacattaactgCATGGCATGTTTACGGAATATAGCTTGTTGACAACCTAATAGGATGACAAATGAGATAGCAATGAAAGAAAGTCCAGATTTAGACAAGGATAAAGGAATTGAAAAGTTATGGATTgcatttattagttttgtttttccaggtcAGTTTTACATTGAAAGCGCTTGTTTGTACAGGTTTCCTGTAGAGCCCAGAGACCACTTACATCTGCAAATGTATCACTATTCCCAGTAAAAAGGAGAAAGATGAATCTATCTAGATGTGGTTTATGTAAGAAAATAGGGATAATTATATGAAaagatataaacatttttcgAAGCTGTATTTCAAAACTCTGTtcaaacattacaatattagGTTGCATACTGTAAGGAAATAAAGTTGGTTTTGTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93879 lncRNA downstream 4966 12336876 ~ 12337194 (-) True G63408
TU93878 lncRNA downstream 5337 12336114 ~ 12336823 (-) True G63407
TU93877 lncRNA downstream 6139 12335766 ~ 12336021 (-) True G63406
TU93874 lncRNA downstream 7555 12332456 ~ 12334605 (-) True G63404
TU93864 lncRNA downstream 37831 12302728 ~ 12304329 (-) True G63395
TU94000 lncRNA upstream 92962 12456048 ~ 12458857 (-) True G63486
TU94006 lncRNA upstream 127191 12490277 ~ 12491882 (-) True G63490
TU94009 lncRNA upstream 136672 12499758 ~ 12504153 (-) False foxp3a
TU94134 lncRNA upstream 285556 12648642 ~ 12649214 (-) True G63578
TU94135 lncRNA upstream 287197 12650283 ~ 12652814 (-) False G63579
XM_043246557.1 mRNA downstream 14182 12324785 ~ 12327978 (-) True atp5pb
XM_043246455.1 mRNA downstream 17741 12315716 ~ 12324419 (-) True eps8l3b
XM_043246541.1 mRNA downstream 59445 12276107 ~ 12282715 (-) True gnat2
XM_043246481.1 mRNA downstream 106422 12228692 ~ 12235738 (-) True amigo1
XM_043246424.1 mRNA downstream 128591 12199611 ~ 12213569 (-) True sort1b
XM_043246395.1 mRNA upstream 700 12363786 ~ 12425996 (-) True prex1
XM_043246396.1 mRNA upstream 700 12363786 ~ 12425995 (-) False prex1
XM_043246497.1 mRNA upstream 67339 12430425 ~ 12438331 (-) True stk38a
XM_043246498.1 mRNA upstream 67339 12430425 ~ 12438290 (-) False stk38a
XM_043246440.1 mRNA upstream 99951 12463037 ~ 12478692 (-) True sema3ga
TU93842 other downstream 77627 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 544958 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 562909 11778271 ~ 11779251 (-) True G63274
TU93424 other downstream 777755 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 1446342 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2361122 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2416445 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 2920775 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 3286140 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile