RNA id: XM_043246446.1


Basic Information

Item Value
RNA id XM_043246446.1
length 3918
RNA type mRNA
GC content 0.46
exon number 11
gene id nol4la
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11579162 ~ 11615271 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGACATTTGCCGTTGCGGTTTGGGACAGTAGGCGAGGCGTCTCTGCAAACAGGTGTGCGACTGCCCAAAACAGGCACACATAATACGACTTTTTTCGCCTTGTTCAGCGGAGGTGGACCTCCAGCACCGGTGTCGAAGCGATCATCCTCGTAGCGGGACAGGGAGAGGAGGGGGAGTCTACTATCGTTTTCAGGCGTTGTAGTTGCATTTGATCGTTGCGAAAAGGGGCTCGCGGCTCACAAAGAGGAAGGGATGGCAACTAAGAAACCATGCGCGGATTTAACAAAAAGGAGCCGAAGTCCCGTCGTGCTAGAGGCAGAGATGTTCAGCGAATTTCAGGACTGGTGCCTCCGGACTTACGGAGACTCGGGTAAAACAAAGACCGTGACGCGccgaaaatacaacaaaatcatGCAGACCCTGCTACAGAATGAGGAGTCGGACGGTGTCTATGTCGACAACAGCCACATCAACGCCAAATTCAAATTCTGGGTGAAGTCCAAAGGCTTTCAGGTCGGCAGCAACATCTTGGGCGAGCACAACAAGAAAGAGCCATCGGGGAAGCCCGTCCTGTACGTCCCTGTCAAGTCTAcgTGTTCAGATGGAGGGGCGGCCCAGGACAGCTCTTTAAAGCGGGTTGCTGTGGTGGAGGATTTTTTTGATATCATCTATGCCATGCACGTTGAGATGGGGGCAGATCCCGGACGAGCACCCAAACACGCCGGCCAGAAAAAGACCTATAAGGCGATTGCAGAGACCTACGCATTTCTTCCACGTGAGGCGGTGACCCGTTTCTTGATGAGTTGTGGAGAATGCCAGAAAAGGATGCACATCAACCCCAGCACGGCAGAGTTCAAAGAGAACGACAGGCCCACCTCTCTGGTCCCAGACCTCATTGATTACAACATGCCTCTCACTGCCACCTATCTAAAACAGATGAAACTACAGTGCATGAACACCAATGAGCAGgatGAGAGTTCGGTAAGCAGTGAGGATTTGGACATGGCTGAGCCCGCGTGGGTCTCTACTGAGCGTGCTCCAGCCGCAGAGCCCAGCAGCCCCACCGCCCCATACACAGAGAGGATGCCTACACCCCCACAGCCCAGCATTAAAGAGGAAGAAGatGATTCCTCTTCAGAGAATGGCAGCACAGCGAACGGTCTGCCTGCACTGACTCCGCCTGGCGCTGCTGCCATGGCGACAGGAGGAGTTCCTACATCTGAGGGGGTGGTTCCATACGGAGAGGTGAACGGTAATGGTGCCGCAGCACCGCTGGACTTCAGCACCACTTCATCGTCCTCTTCCTCACAGGAGGGACAGCAGCCAGTCAACCTGAGCGACAGACTGGCGCTCGGATCCTACGCATCTGACCCCAACAGAAAATTCCCTGTCAAAACTGAGTACGGTAACAAGTCCCCTCAGTACAGCTCAGGAAGCTATGACTCTGTGAAGACGGAATTGAGCACGTGCGGGGAGGACATGACCCCGGGCCGCTCTCAGGTcatagatgatgatgatgatgatcacgATGACCATGACGACAGCGACAAGATAAACGACGCTGAGGGACTGGACCCTGAACGACTTAAAGCTTTTAATatgtTTGTGCGGTTGTTTGTGGATGAGAACTTAGACCGGATGGTTCCAATCTCAAAGCAGCCCAAAGAGAAAATCCAGGCCATCATCGAGTCCTGCAGCCGTCAGTTCCCAGAGTTCCAAGAACGTGCTCGCAAACGTATCCGAACCTACCTCAAATCCTGCCGCCGCATGAAGAAGGGTGGCTTTGAGACACGGCCCACACCCCCTCACCTCACCTCCGCCATGGCTGAGAACATCCTCGCAGCAGCATGTGAGAGCGAAACACGGAATGCAGCTAAGAGGATGCGCCTTGATATCTATCAGGCCCATGATGAGTCAGCTGCAGCAGACAAGTCCAACTCCAGAGATCCGGCTGCTCTGGCGCACTCAGGCTTCACACTGGCTGCCTCGGCCTACTCCCAGGACCAACTCTACACCAATGGTGGACTTAATTACAGTTTCCGTGGATACGGGACCATTGGAAACAGCCTTCAAAACAATGGCACATCACAAACCAATGGTCCCACTGATCTCAGTATGAAATCTTTGGCATCCAACAGCACTTCCTCCTCCAGTTCAAACAGTCATGGTCAGGGTGGAGGGGGCGGAGGGGCATCTGCCCAGCTCAGCCCGCCTGAGGTCACGGCTGTTCGGCAACTGATTGCGGGTTACCGCGAGTCTGCGGCCTTCCTGCTCCGCTCTGCCGACGAGCTTGAGAACCTCATACTGCAGCAGAACTGAGAACTGCACACAGGCTGGTGCTGCCCGTCTCTttcattaacacacacataaacgcaCACTATGACAGGAAAGATACATGTAGCTATGTGCacttacatacatatacacacaaagcCCATAGGCAAAGTTTGACACCACAGGGGGAGCAAAGTGGGGGGATCAAAAGAAGCTGTATCTAAAGGCGCACATACAGGGTACAAAATTGAGAACATTTACCAGCCATAATGATCTCAGGTTCACCGGCCATGAACctatatttgcataatttttaaacataacatttatttaaatgtaaattatttattattattattattgcatatttacTAAAAATCAAAGCACAGCAATGTTTCTTATATGAACTGCTACCTctcattaaaactttaaagtaATTATAAGGTTCTGAGATAAAAACCTTGAGGTCTTTCTTGCAGTGTAACCATTTATTGGATTGGCAACATAATTGGCAACATAATACTTgggtttcattttaatgttattgcacTGTAGTAAActgtcaaaatataaaaatcgtGTATTATGTTATTCTCAGTTAGGCACTTAGCAAGTATTATTTTTTGGCTGATACTAAAGTGCTTTACACAGGCCTGTTAATACAcatcaagaaaataaatgtactcAAACAGAAACTGCAGTCCCTAGAATCAATGTTTAAGGCACTTGAAGTATCTTGTTGATTCTTGTgcacagcaaaaataatttgttgacACCAAACAAGAAAAAGCTCATTTTGACCACAAAAATGATACGTTAGTGATACGTTCATATATTTActgatataatttattatattataatttatataacttatagcttttatttttaagctttacaAAAGCAAAGTTAAAACAGCTCCAGACTCGAATCCCCCAGTACCCCAAACTCTGCCTATGCTCGTTCTATAAACCTACCTATCAAACATTGCTCATGACAGCTTTATGTCCATGATAGTGTCTTTATCCAATTTCCTTACCCTAGAGTTCAGCGAGGCTTAATCCTTTTCCGAGGGCTGAGATGACTTGTTAAACGTTGTTTTAATGATGAGATGATCAGAACACAAAGTAAGGGGTGTCTGTACTCACAGCAGCATTACAAGCGTCTTGCACAGAGCACAATCACACAGTGAGAGCTATCAGTCCACCACAGAGAGTCCAGACTtttgagacacacacaaaaaaaaaatctgtaattttaaGAGTGAtgcccaaaacacacaaaatgatgtCATCTTCTGCCTTTTTTACGCTATGgcacaaaatattatatgttatcCTATATGATTCCTATATGTCAACGGCATATTGTTTTATAGAATTTGAAAAAGTTGTTCTCTTACCATAGACATATCCATGCAGCAGCTTTGCTCCAGATTTAGCCATTTTAGATATAGAACAGATCTAAGAGAAAAGGGTTTTTGTAAGATCTCTCTTCTTCTGTTCAATGCTGATGAGGTTTGGGAAGAAGGTGCAATGTAGATGATAATCGTTATAGTGCATCAGTGTCTGAAAATCTATCGTTTTCAATCATAAACACATTACCAGATGTCTtttgtacacatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93422 lncRNA downstream 13824 11562278 ~ 11565338 (-) False G63095
TU93423 lncRNA downstream 14757 11562278 ~ 11564405 (-) False G63095
TU93427 lncRNA downstream 14757 11562278 ~ 11564405 (-) False G63095
TU93389 lncRNA downstream 17529 11560987 ~ 11561633 (-) True G63076
TU93388 lncRNA downstream 17603 11560987 ~ 11561559 (-) False G63076
XR_006251589.1 lncRNA upstream 5176 11620447 ~ 11621205 (-) True LOC122350252
TU93463 lncRNA upstream 33238 11648509 ~ 11651904 (-) True G63120
TU93470 lncRNA upstream 48164 11663435 ~ 11664774 (-) True G63127
TU93477 lncRNA upstream 51895 11667166 ~ 11667480 (-) True G63134
TU93660 lncRNA upstream 206013 11821284 ~ 11823244 (-) True G63254
XM_043246480.1 mRNA downstream 3949 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA downstream 3967 11569548 ~ 11575195 (-) True ptk6a
XM_043246486.1 mRNA downstream 75130 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 127716 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 186491 11357175 ~ 11392671 (-) False magixa
XM_043246525.1 mRNA upstream 60003 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 127868 11743139 ~ 11747881 (-) True wasb
XM_043246488.1 mRNA upstream 127868 11743139 ~ 11747879 (-) False wasb
XM_043246487.1 mRNA upstream 127868 11743139 ~ 11747878 (-) False wasb
XM_043246496.1 mRNA upstream 134325 11749596 ~ 11764650 (-) False slc38a5b
TU93421 other downstream 14757 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 14757 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 14757 11562278 ~ 11564405 (-) False G63095
TU93259 other downstream 233304 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 447955 11097002 ~ 11131207 (-) False LOC122349915
TU93692 other upstream 163000 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 181859 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 648423 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 735975 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2194157 13809428 ~ 13863250 (-) True G63933

Expression Profile