RNA id: XM_043246465.1


Basic Information

Item Value
RNA id XM_043246465.1
length 2263
RNA type mRNA
GC content 0.47
exon number 5
gene id dclre1b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11970741 ~ 11974829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTGCGCGGCATGTAGGCGTGGACGGTAAACGTAGTTTTTGGCGGACAAACCAGCCGCTAATGCCTGAGCTCAGTAGTGCCTTTGAAAGCGCGCCgaaatcttttgcatttgtAAACATACCGCGAGCCTCGTTTCAGCATGGCGCCCATCTGCACAAATACACAAGTTCGGCGAACCGGCCTGCTAACCACACGCTCGGATGAACCGTGACTGATCCCATTAAGAATAAGCGGTGGGCACCGCCTGAACTCTTCACAGCAGCACAAAATGAACGGAAAAGTCCTACCAGACACTCCAATAGCCGTAGACTGCTGGCAGCTCCGCAAGTGCCATCACGTCCGTCTGTTCTTCTTGTCTCACATGCACGCGGATCACACCTCTGGCCTGTCATCCACCTGGAGCCACAGGCCCATATACTGCTCTCCTCTCACTGCCAAACTGCTCCAGCGTAAACTCAAGGTCAAAGAGAAATGGATTCGTCCTTTGGAGATTGGGGAAGCTCACATGCTATTGCTTGATGATCTTGGAAAAGAGCGTCTGACCGTTACTCTAATAGATGCCAATCATTGTCCTGGAGCGGTCATGTTTCTCTTTGAGGGATACTTTGGCACCAGACTCTACACTGGTGATTTCCGTTACACCCCATCTATGCTCAGAGAGCAATGTCTGAGGAACACCACTACCATTGACGTGCTGTATCTGGACAACACCAACTGTGACCCCACTCGTGCCGTTCCTTCTCGTCAACGAGCCACTCAGCAAATTAAAGAGATCATTAGGGCTCATCCTGGGTTTGCTGTGGTCATTGGTCTTTACTCTCTGGGTAAAGAGTCTCTGTTGGTGGAACTGGCTATGGAGTTTAAAACATGGGTGGAGGTGGATGGAGAGCATTTGGAGACCTTGCGTGTTCTGGAGCTCCCTGACATTTTCACCACTGACTCTGGTGCTGGCCGCATTCGTGTGGTCTCTCAGTCAATGATCAACGCCTCCAACCTGCAGGCGTGGAATAAAGTGCAGCCCACCATCGCAATATTGCCCACCAGCCGCCCCATGATCTCTTGTCACTCTAATGTGTATGTGGTGCCTTACTCAGATCATTCTTCCTACCAGGAGCTGGAGGACTTTGTGTCGGCCCTGCGTCCCATCTCATTGGTTCCCATCGTGGGCAACTGCCTGCcttatttttcttctcttctaaACCCCTGCAAGAAAAAGCCCAAAGAGGTAGTTATTCCGGAGTCAGTCAAGCACTACATGATGACAAATTCTAATATCCAGACCTTTACAAATGGCATTACAAACATGCTTCAAAGAACCTCGCGGCCATATTCTCGCGGGGTGGTGTTTGAATCTCCAGAGTCAAAAATAAGCCGACTTGATGGGGATGATGGGGATTCTGAGACAGATCAAGACTCCTGCGTTCTTCTAGACATGAGCACCAACTCCTACCCTCGAGAGAACGGCCCTCACAACAAACGTAGGAAACTCAGCCAAATTGCATCAGATGTCATCACAATTGGCAGCAGCCTTCCTTCAGATGACAATGACTCTATTAGTGCACTTACAGATGTAAGATCACCTGAGCACAGCTCAGTGTGCGAATGTGGACATGAAAGAACAACCAAGTCCTCCAAGGAGAAGAGTCCTCAAATGGGCAGCAGCAGTTTTAGAGAAAGGTGCTCTTCACTGGACAGCATCAGTATTCACGACCAAACCTGTATTACCACTGTGCTCACACCCACAGAAACACGATCGGTGACCGCTGCCTTGACCTTCATATTACAGCGAGAACAGATTGAGCATCTGCTCCTTGAGAACTTCATTATACCCGCTGAACAATTTAAAGGTGAGCAGATGTTGTGCGGAGTTCAAGAAGAGTTTCGCCTTACTCCGGTTGATCTTCCCAAACCAGCTGGTGATCCTCTTGAAGCAgctataaaaacattcaaatctaAATGCGATTCAGCAAGCACTTAAAGTGTGTGGCATGTTtatgtgaaggtttaattatcATGCATCACTGTAATTTAGATGTGAACAGTATTGTGGTTAAATCTATAGATCGACACTGTGCCAAGTACTTAttctttttctgcatttctttTGAGCCAAAAAGCGTTGATGTTATTGGAAATACTGATGGAATAATTTCACAATGTGGATGTTGAGGTTCAACATGTTTAGCATGAATTTATTATCATGTAGAATCAAAAAGCACCTTACtatgtaaatttgtttttagATAAACCCTACTAAATGTG

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0031860 telomeric 3' overhang formation biological_process
GO:0031627 telomeric loop formation biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0008409 5'-3' exonuclease activity molecular_function

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93738 lncRNA downstream 114679 11855745 ~ 11856062 (-) True G63304
TU93660 lncRNA downstream 147497 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA downstream 147497 11821284 ~ 11823244 (-) False G63254
TU93477 lncRNA downstream 303261 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 305967 11663435 ~ 11664774 (-) True G63127
TU93792 lncRNA upstream 41897 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 44882 12019711 ~ 12019953 (-) True G63347
TU93798 lncRNA upstream 47686 12022515 ~ 12022753 (-) True G63350
TU93778 lncRNA upstream 76528 12051357 ~ 12052979 (-) True prok1
TU93808 lncRNA upstream 78302 12053131 ~ 12054530 (-) False prok1
XM_043246571.1 mRNA downstream 79458 11883738 ~ 11891283 (-) False lhfpl5b
XM_043246570.1 mRNA downstream 85236 11883738 ~ 11885505 (-) True lhfpl5b
XM_043246582.1 mRNA downstream 127889 11841181 ~ 11842852 (-) True c8h1orf194
XM_043246577.1 mRNA downstream 130140 11838293 ~ 11840601 (-) True zgc:195245
XM_043246461.1 mRNA downstream 133351 11828122 ~ 11837390 (-) False inavaa
XM_043246540.1 mRNA upstream 2371 11977200 ~ 11983309 (-) True adora1b
XM_043246544.1 mRNA upstream 35659 12010488 ~ 12013150 (-) True zgc:110353
XM_043246585.1 mRNA upstream 76589 12051418 ~ 12053993 (-) False prok1
XM_043246423.1 mRNA upstream 103410 12078239 ~ 12083038 (-) True rbm15
XM_043246535.1 mRNA upstream 111090 12085919 ~ 12091662 (-) True alx3
unassigned_transcript_1295 other downstream 173539 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 191490 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 406336 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 288865 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 376417 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1834599 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2749379 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2804702 14779531 ~ 14781710 (-) True G64228

Expression Profile