RNA id: XM_043246486.1


Basic Information

Item Value
RNA id XM_043246486.1
length 4364
RNA type mRNA
GC content 0.46
exon number 8
gene id si:dkey-70p6.1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11481644 ~ 11504032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCAATGGAGTGGGCACCGCGCTGTCATATGGTACTGTCGCCGATGCTCGAGACAGGATTGAGGCTCGAGGAGGCTCTGAGGCTCAACGGAGGCGGTCGTGACGAGGTCTTGCTATCACAACCGAGCCGTGACTTGGAATAACCCAGCTGTGCGTTTGCACCTTTCGCCTTATGAGCGCCGCGGCATGTACAGGAACAATGGGGATGGTCAGAGGTTGCGCTGAGGACGCCAGATGCCATACCGCACACATGTCCTCCCTAACATACGAATCCAGGCTCAACACAGGTTATTGATTATGCTTGCGGGGTCCGACCGGGAGCCAGACgtttcagcagcagcagcagcagcagcagcagagagagTGCAGCGAGGTGGATGCTGCGCGGCGACGCGCCCCCTGAATCCCTAAACTGAatctTGTGGACagtgtttgagagtgtgtgtgtgtgtgcttatgtgtgtgcgtgtgtgagggCGAGAGTGAAAGTGTGTATGTTAGCACTTCCACATGGCCTCCATGCAGGACGGGGTGAACTTCTCTGCTCATCCCTACGGCAAAGTACTGCTGCTGGGGGCCATCGCCGCCGCCTCAGCCTTCGTTGTCACCATCCTCATCGTCGTGCTATGTGTGGGCTGCCAGAGGAAAGGGAAGACACACAATGGCCCTGGAGAGGAGAGGAAGCACAGGCTCATGGACATGAGTATACTGCGACAGTCCAAGCTGACCTCCATCAAATCTTCTAAGAAGAACCGACCCGCCAGTATGGATCTGCTCCTACTTCCTAGCCGTCGATCAAACTCCGACCTGCGTTCTCAGGGCCGCCAGCTGCCTCAGATCCCCTCTGGTGAGGATGGGGAACACACGTATGCCGAGGTGGGCCGCCGCTCTTCTCCCACACGCGGGTCTGAGGATGCCCGCTATGGTGTCGGAGGTCGAGCTGGAGAGACGGACACACCCGCCCCACCAGCGGTCCCTGCTAATACCCCTGCTCCACCTGATCCCGACGGGGACTGCTTGGAGGGTGGGCTTCCAGAGCCAGAAACCCTCCCCCAAGTGGTAAACACACCTCCTCAACCGCAGGAAACAGTAGAGTACGCCTGCATCAGAAAGGTCCGGAGAGTGGACAAAGCAGCCCAGAAGAGGGACAATGGGACGGAGACCGAGGAGGGGCTCGGACAACAACGACACAGCAGTGGGGACCTTCGACATGCCCCACCCACTCACCCAGCCCCGCTTCCAACACACCCACACAGTCAGAAGATTCCTCGGAAAAATGTGGAGGCCTTCAATCTTCCAACTTTCCCTAAGGAGGCAGTGTTTATGGGAAATGGAGAACAGTACATATGGAAACCTCCGGAAGAAGATGACATCATCTTCCAGCACAAGCAGATGGGTATTCTGAGCTCTCATGCGGGAGAGAATATAGCAGCATCTGCAGCAGGGATCACAGAGATGTATTCGAAAGTCTGCAAACCGGGCAAAAAGAAGCGAGGCATGCCTGGCTCACCCACCGCCACGAGGGACATCAGCGGCTATAGGACCTTGGCTCGAGGTGACCGCGGTGAGCGTGACGGGGGTTTCAGCGTGGTAGTCAAACCCCAAACGTGGGCCCCACAGGAGGGCAAAGGCACGAGAGCGCCACCTGGCTGTATGGAGGACCACTGCTACGAAGCCATCAGCACTGAGGAAACAGACCTGGCTTACGAGACCATGGAGGGAGGGGGAGGCTGGAGGCGTGACAGGCCTCCACCCAATGCCAGTGCCACCTTGCGGCCCAAGCGGAAACGGCCCCAGCAACCCTTGCAACAACCGCCGCCCCCTCCACCCCAGCAGACCCCCAAACTGCAGCATCTCCCAGCCAAAACAATGCTGATTCCTGGGGAGAGCCTGTATGAGAGCATCCCTGACCTGAAGCAGGGCTCGGCCACCTCCAGCACAACCACCATCTTTACTTTTAATGACGGCATGGAGATGTATGTCACTGGCCTGTAGGCGGCGCTCTGAGGAAGGGAACTTTACTCTCTGGGGGCTTGAATGGGGACACGTAAGCGTGTCGTAACCCAATGGGATACGCGCATTGTGCCACtgctatatattttacatgGGTTCCAAGTATTAGTTGAGCATTAATTGAGTTTTGTATGTCTAGTTAAAGGTCAGTATTCTCGCAGCACAAAACGATAGAATGCTTACGTGAAAATCCTAACGAAATGATTTTGCCTATTCACATGCCTCCATAACGAAGAAGTAAAAATAGTCACCAGCCACGACATATCACAACAGACAACATATCACACCCGACAGTAGCATTCCTATAGAGGAAattcttgtttttgtcattaCATGTTGTAGTTAAGGACAGAGTGACCATCGGAATTGCGGGTCAAACTTGTATTTGATGCCTAGATAATCCCAAAGTAGAACAAACAGAGCACAAGTCTATTACAGAAGTAACTTGTTAAGAAGCACAGTTTAATTGTGTCCCCGTGGCCctctaaaaagaagaaaaaaattatttggcaGACGCCCTCAGCAAAGtactgttttacaaaaaattcTACACAGAAAttgaacattattagaaagccaATCAAAAGCTATTGCCAAgcaaaatatcatatattaacaaaataatttatttcatctGTTCATAGAAGAGTTGATCCTATTTTAAAATGGCTAAAAGCTATCTATTGCCTAAGAGCTTTAGGAAACACATGGCCCTATTTTTGTAAAGTCAAAGCCtctatttatgtaaaaaaaaaaattaatcataatttcaGAGCTAAAATAAAGATTCTAATTCGACTGGTCAAATAGATCCTGTACGCCAAGAAAGTATTTTCTTATTAAGCACAAATATCTCATGCTTAGCATGTTGTCTGTCTGAGACAGTGCCCTTCTGAAATTGAAGAGTACTAgatttaaaatctgttaaaagtAATAGATGGTAAATTGCAATTTTCAATAAAGCAAGATCATGGAGAGAATTAGCAAAAGCTCAGGGAcagtgaacaaaaatattaaataattgcacACAAAATGTTGACATATCTCACAAGAGACCCCCAATGtcttttcatgttattttttttgttttggtcataCATCAATTCAAACTGTCACATAAGTCACCACAGCACTTCAATGCGGTAAAgtaagtgtttttctttgtcaatACTGTTTATGCACTTTGCCTGATTAAAAAGATGCAtgctttcaagaaaaaaataccCTTGtaaagggataaaaaaaaagaaaagaaagaaaagtgaaacTAGCACTGTCCTGTGGTATCAGAGAATGGTTTATTTCTTGCTGTTGTCGGTGGATTGTTTGATTTATATGCCTTTTTCTTCATCTGAGAAAGAGCACAAAGTGAATCGCTTCAGGACTGAGGGAGACCAATGAGGACTCAAGGAGGACTCTCTAAATAAAAAACTGGACAGTTAGGAATATAACAGTTGGTCAGAAGAAATGTATCATAGACAATCCCTTTCCCCCATCATTTCAGAAGCAGTCAGGATGTCCATGTATGTCCAGATCAGATTGAATGGAATCACATACATTAgattgctgcaaaaaaaatctcctGTATGTTACACGAAAGTAAtaggagatttaaaaaaaaaaagaaaaaaaagaaaagaaataaaacaaatgagtaAGAGATTTAAAATTAGTGTATGTCGCCCTGTAAGTCTATGGGAGGGGGATTTGGGATTTTATGGCCAGATAGTGACAAGTTTCACCAGTGGACAATGTCAAAATATCTATGATTTGTGGACTATAGCCGCTGTCTCTTGGTGTCTTTGAATCTGATGCTAATGTGATCTGGATTAAATTATCCCAAATGGCTGGAGCACACAAAAAGGGGCTCAGGTCAACTAAATATAATCAAAGAGCTTGTCTAAGCCCTCGTTGCTATCAAATGTTGGTGCAATGTTGTAAATATGTTACAAGAAGAATTACAGAAGAAAATGGGGGGAGGGAATTTGCTCTTGGTGTTCCTGAAagtatttgtttctttctggTTGTCCTTTTGGAATGATTTTTCTGGTGAAAAATTATCTCAGCAGTATCTCTGTGAGTTTTGATTATGTGCTTTgggattttttgttttgttttgttttccacatcATTTTAGCTATACTGTGTATCTCAAAGACCAGTTGAGTTTAGTGTGGCAGCTAATGTTGTGCGTTTGCTTATCAAACAACAGGGTGGTGTGTATTAAAGCTGTGTAATTAAGTACTAATGTGCAAAagattgtaatgtttttatatcaaaatgaCTATTCATAAAATGTCGGGTCaagtttatacttttttaaataaagtagcacttcaaaaaacacaaa

Function

GO:

id name namespace
GO:0050852 T cell receptor signaling pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93299 lncRNA downstream 39648 11437746 ~ 11441996 (-) True G63014
TU93312 lncRNA downstream 39826 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA downstream 39826 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA downstream 39826 11432781 ~ 11441818 (-) False G63014
TU93256 lncRNA downstream 204730 11276359 ~ 11276914 (-) True G62992
TU93371 lncRNA upstream 18990 11523022 ~ 11523638 (-) True G63065
TU93377 lncRNA upstream 30517 11534549 ~ 11534772 (-) True G63071
TU93378 lncRNA upstream 32011 11536043 ~ 11536517 (-) True G63072
TU93379 lncRNA upstream 33980 11538012 ~ 11538299 (-) True G63073
TU93380 lncRNA upstream 35479 11539511 ~ 11539833 (-) True G63074
XM_043247378.1 mRNA downstream 30198 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 88973 11357175 ~ 11392671 (-) False magixa
XM_043246404.1 mRNA downstream 88975 11351304 ~ 11392669 (-) False magixa
XM_043246480.1 mRNA upstream 65516 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA upstream 65516 11569548 ~ 11575195 (-) True ptk6a
XM_043246446.1 mRNA upstream 75130 11579162 ~ 11615271 (-) True nol4la
XM_043246525.1 mRNA upstream 171242 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 239107 11743139 ~ 11747881 (-) True wasb
TU93259 other downstream 135786 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 350437 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 490940 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 941353 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 1002959 10440764 ~ 10478685 (-) False G62826
TU93421 other upstream 58246 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 58246 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 58246 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 274239 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 293098 11797130 ~ 11797202 (-) True trnaf-gaa_1

Expression Profile