RNA id: XM_043246512.1


Basic Information

Item Value
RNA id XM_043246512.1
length 1654
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC122350200
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11797768 ~ 11801654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCCTACACGGATCGGGTTTttgtaagacattttttaaGGCAGCTAGGCAGGGTGAAGCAAAACCACTCGTCTTCTAAACTAAAGGGAAGTGTGTAAGAAAGCATTTCTGTCACACTGATTCAGCCATGAATCTGATCTTGTGGGGGATTGTGCTCTTCGGGATCTATGTCCCACAGTCAGTTTCACAGATGGTGGactgtttttcatcatttacctTGTCCCGTGGGAAATGTAGTGGTCTTTTGGGTCAAGTTCAAAAAGACAAGTGTTGCTTGAACACCAACTACGGCTACCAAGAAGCAGATGGCATTTGTAAGTCCTGTGGGCGGCCGACGTGGTCTGAATGGTCTAGCTGGGGCGAGTGTACGGTGAGTTGTAGAGAGGGTGTCACCCAAAGGCGACGGTCTTGTTATGGCATTGGTGATTGTGCAGACCCTGAAAATCTAGGAACGCTTCAAACTAAACCATGCGTGAAAAGACCTTGCTGTCCAGTGGAAGGTGGCTGGTCAGAGTGGGGGAACTGGCAGTTGTGTTCAGTCACATGTGGCGATGGAATGAAAAAGAGGACAAGAACATGCTCTGAACCCATTCCAGAATGTGGGGGCTCCTGCAGCGGGGCAGCGGAAGAAGCCACCAACTGCTCCACTGAAATAATCTGTCCGACTCACGGCGGGTGGTCGAGTTGGGGAAGATGGGGTCCCTGCCCAGTTACTTGTCTTAAAGAAGGACGCAATCCTGAAAAAGAGGTTCGTACAAGGACATGCACCAACCCTCTTCCATCTGTGGTGCCACGTGGCAATAACTGCGAAGGCTCCAACACGGACACCCGCCCTTGCAGCGGACTACCTTTCTGCCCAGACGATGGAAACTGGGGCGCCTGGACAGGTTCCACGCCCTGCTCTGTGACGTGTGGAGTGGGCCAGCAGACTCAAAGACGGAAGTGTGATTCTCCTAAACCCGCACACGGTGGAAGACAGTGTCGAGGTGAAGACCAAAAAACTGGTGTCTGCGTCGTTGACGTGCCCTGTCCAGTTAATGGGATATGGTCCGAATGGGAAGAGTGGAGTAAATGTAAACAACCTTCAACTAAAACCATTAGATGTGCGAACAGAGAGGGAACCCGAAGGAGATTGAGAGACTGTATTGAAAGAAAACACGATGGAGCCCACTGTGAAGGAGAGATTGTTCAACATAGCAACTGCTATGACATTAACAACTGTCCAATGCAGGGCGTTTTAACAGAGTGGAGTGAGTGGAGTTATTGCAAACCTGACTGTGGGCAAGACTCTGAACAAACCAGAGAAAGAGTCTGTGTCGCTGACATCTCTAAATACCGGTTCCAAGACCGCAGTCTTTTTACAGGGTTTGCAATAATTAACTGTACAAATCTGGAAAACGACATAGAAAGAAAACCATGTCACAATGTTCCTGAGTGCAACAATAAGGAATGAAAAGAGGACCAGCTGCTTTACACAGTTACCAGCAACTGGAAGGACCTTAACATGCCAAGCTGTTCTATAATGAAATGTGATATTAACCAAAAAACGCTTGCTTTATTAGCCTTTGTGACATGAATCGGATTGACTGTTGATTGATGCACACCTCTGTAAGCTGCTTTGCTGCCACAATAAAgttgtaaagtaaaataaa

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93477 lncRNA downstream 130288 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 132994 11663435 ~ 11664774 (-) True G63127
TU93463 lncRNA downstream 145864 11648509 ~ 11651904 (-) True G63120
XR_006251589.1 lncRNA downstream 176563 11620447 ~ 11621205 (-) True LOC122350252
TU93427 lncRNA downstream 233363 11562278 ~ 11564405 (-) False G63095
TU93660 lncRNA upstream 19630 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA upstream 19630 11821284 ~ 11823244 (-) False G63254
TU93738 lncRNA upstream 54091 11855745 ~ 11856062 (-) True G63304
TU93792 lncRNA upstream 215072 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 218057 12019711 ~ 12019953 (-) True G63347
XM_043246496.1 mRNA downstream 33118 11749596 ~ 11764650 (-) False slc38a5b
XM_043246494.1 mRNA downstream 33118 11749596 ~ 11764650 (-) False slc38a5b
XM_043246495.1 mRNA downstream 36858 11749596 ~ 11760910 (-) True slc38a5b
XM_043246489.1 mRNA downstream 49887 11743139 ~ 11747881 (-) True wasb
XM_043246488.1 mRNA downstream 49889 11743139 ~ 11747879 (-) False wasb
XM_043246461.1 mRNA upstream 26468 11828122 ~ 11837390 (-) False inavaa
XM_043246460.1 mRNA upstream 26468 11828122 ~ 11837390 (-) False inavaa
XM_043246459.1 mRNA upstream 26468 11828122 ~ 11837390 (-) True inavaa
XM_043246577.1 mRNA upstream 36639 11838293 ~ 11840601 (-) True zgc:195245
XM_043246582.1 mRNA upstream 39527 11841181 ~ 11842852 (-) True c8h1orf194
unassigned_transcript_1295 other downstream 566 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 18517 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 233363 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 233363 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 233363 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 462040 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 549592 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2007774 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2922554 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2977877 14779531 ~ 14781710 (-) True G64228

Expression Profile