RNA id: XM_043246525.1


Basic Information

Item Value
RNA id XM_043246525.1
length 3470
RNA type mRNA
GC content 0.46
exon number 2
gene id gpr173
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11675274 ~ 11683625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGATCCAGAGAAAACCGAGGTAGAGCGCAGAGACGGGAGCCGCTGTTTCCAATTCACCATCGCAGAAGAACCCATTTCATTTCGTTCGTTTTCCGTTAGCATTCTCGATTCAGCGACGACACTGGGATTCTGACAGTCATTGCGAATTCCCGAGCAAAGAGTCAGGTCTGACTGTCATGTGTGATCCATCTTTTTTGCGCCTTGCATCGCAGACCGTACCAGgcttgtgcattttaaatatatagggCGCTTACATGTACTGTGTACATGTCTCCGCGTAGAATGACTACAGTATGTGAGAGGACGACGCTGATGCCAATGGATATTCCGAGGGATGATGCGTGAAAAAGCGGATTTATTCCCGTCGAAGATAAGATGTGTATCGGTGTGGCGTGGGAGAAAATGTATTTGGCTCCAGCTAGAAAATGAAGATGGGAAGAAGCGCCTTGTCCTGTAGCCCAGCGGCGAGAGCCAGTCGTTATTTACACGTCTAAATCTGCGCACAAGATAATGATACTGACGCTGTGTCTCAGGATTAAACGATACcacaaaacacagcagaaataGTGTAATTGTGCTATTAAACTCTGCTTGATTTAGACACCGTGTGATGGGAATATACTGCTAAGGCTTGGCCTAGCTTTATGGAAAACCCGAAGACATGACATGCACACGAAAAAAGAGGAAAcgatattttttggtttttaaaaccCGTATGTGTGTAATATTCCAGCTTCTGGCATAATATTGTTTCAGCCGTTCAGCAAAGGACTTTCCAGTGAAACAgatattgtttctgtttttttcagacGTGACCATTCCctgtattaattaattcattaattattttttttttcattctctgtTGTTCATAAAGGACGTCGAGGTTCATCTTGGATTACAATTTGGATTCATGTGCGATTCCTTGAACGCGTTGTGTCGGGTCGAAAAAAACGcatttgcacctttttgtgtgtgtttttattttttatttatttttattttttcatatatttgcaACAAGCTCCCGTTAAGGCCTACCATCGAGTCAAGATCCATTGTCTGGAGGAAGATCGAGAATTATAGGTGTGGAGGCCAGAAGAGGTGGTACATTTGAAGGGAGGCATCCGAAGAGAACTGTACAAAAATGGGGCAATGCAGATCAAGCTTCTCTCCTTCCATTTGAGACAACAACGAAAGGCAACCACGAGGACGGACGACAGCTCAGCCGGAGGAGGCGGAGGTGGAGGAGGGAGTGGAGGAAGCGAGGGTAAAGGAGGAGTTGAAGGAGGAGGAGTGCGATTTGAGCAGCAAAAGGTATGGCCAACGGAAACGCAAGCAGCGATGGGCCTGGGAACCCCTTGGCGGCCGTGGTGTCCACAACTGGTGGTGTAATGGGTGGAGCACCTTCCTCGGCCGTGTCTACCTATGTTAAACTTGTCCTTCTGGGTCTGATCATCTGCATCAGCCTGGTGGGCAATTTAGTGGTATCCCTGCTAGTGTTACGGGACAGAGCCCTACACAAGGCACCCTACTACTTTCTTCTGGACCTCTGCCTCGCCGACACCATCCGCTCGGCGGTCTGCTTTCCCTTTGTCCTGGTGTCCATCAAGAACGGCTCGGCCTGGACTTACAGCGTGCTCAGCTGCAAGGTGGTGGCCTTCATGGCCGTCCTTTTTTGCTTCCATGCTGCCTTCATGCTGTTCTGCATTAGCGTCACACGCTACATGGCCATCGCCCACCACCGCTTCTACTCCAAGCGAATGACCTTCTGGACGTGCGTGGCGGTGGTGTGCATGGTGTGGACCCTCTCAGTCGCCATGGCCTTCCCACCAGTCTTTGACGTCGGCACCTACAAGTTCATCCGTGAGGAGGACCAGTGCATCTTTGAACATCGCTACTTCAAAGCCAATGACACGCTAGGCTTCATGCTAATGCTGGCTGTGCTGATCCTGGCCACTCACGTGGTCTACATGAAGCTTCTGCTATTCGAATACAAGCACCGAAAGATGAAGCCGGTCCAGATGGTTCCAGCCATCAGCCAAAACTGGACCTTTCACGGACCTGGAGCCACAGGCCAGGCAGCCGCAAACTGGATAGCAGGGTTCGGCCGTGGCCCGATGCCCCCCACTTTATTGGGCATCAGGCAGAACTTGCACAACCAGAACAGACGCCTGCTAGGCATGGAGGAGTTTAAGGCAGAGAAGCAGCTTGGCAGGATGTTCTATGTCATCACCTTGTTTTTTCTGGTGCTCTGGTCCCCGTACATTGTGGCCTGTTACTGGCGGGTCTTTGTGAAGGCGTGCACCATCCCGCACCGGTATCTTTCCACCACCGTGTGGATGAGTTTCGCCCAAGCAGGCGTGAACCCCATCATCTGCTTTTTCCTCAACAAGGACCTGAAGAAGGGCCTGCTGGCCCACCTGCCTCCCTGCTGTAGAACTCCACCTCAACTGCCCCGTGAGCCTTACTGTGTCATGTGAAGATGAGTGTTCATTCAtaatgttttggggtttttttctttctcttctggaTGGTCGGAGAATGGACAGCCAGGGGGAGGGAATAAGAAGGCTTTAAAGATGGAGATACGAATGAACTTTAAGAGCTGTTGTGGCCTTTGATTCAGTTTAAGATGCTTTAAAAGGGTGGATGTCATGGAATAAGCATCTACTGTCACCTTAATGATTTTAAGGGGGAAATGGGCTCTACGCTAATGTGTGGTTTGGTATATCAACTCTAAACTGGTTTGAAGAACCGTATGTTTTGCGCTAGAATGGTATAAATCAACCAAACTGGTGGTCTATTTTATGGTGAATGTATGAAGGCTATTTTAAATGGCTTCTCATGATCGATCTCTGCAAACATTACCATTTGGTTTGGCTCAGTATCTGTATCCCTTTACCAGGATCCTGAGGGCCTCGAATCaaagatttactaaaatattgttCATGCCTTGTGAACAGTTGCACTCCTGGCAgagtaatttatattatttgaacTACTGATTCAAAAATACtctatgtgcatgtgtattaCCTTATCTTTAAGGGGAAACAAACTTgagattaaactatttttaagaatgAGTGCCAAGCATAAGCCTCAAGGAATGAATGAGgctgacaagaaaaaaaaaaagagagagagacaaagttCCTAAAATTATGCTAATTGGTTGGGCTGAATCATTCCTGTGGCTTCATCAGGCAGGAATTAAGATGCTCATGAAAACAGTGTGTATACAAAGGCAACTTCCAGAACAAATGATGTTTTCCTCTCAAGTTGATTCAAAGGGATTGTAGATGAAAGGAGCTGACTGAAAATATGAATCTGGGAGAAATATGGCCTATTTGGGTTTGTAGGCGCCCTTTCCCTAAGcaacatgtaatttattgtttgtttgtttttatctctttctctctctcccaactctatttaatttataaaatattttctagcATTGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93477 lncRNA downstream 7794 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 10500 11663435 ~ 11664774 (-) True G63127
TU93463 lncRNA downstream 23370 11648509 ~ 11651904 (-) True G63120
XR_006251589.1 lncRNA downstream 54069 11620447 ~ 11621205 (-) True LOC122350252
TU93425 lncRNA downstream 59349 11562278 ~ 11615925 (-) True G63095
TU93660 lncRNA upstream 137659 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA upstream 137659 11821284 ~ 11823244 (-) False G63254
TU93738 lncRNA upstream 172120 11855745 ~ 11856062 (-) True G63304
TU93792 lncRNA upstream 333101 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 336086 12019711 ~ 12019953 (-) True G63347
XM_043246446.1 mRNA downstream 60003 11579162 ~ 11615271 (-) True nol4la
XM_043246480.1 mRNA downstream 100061 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA downstream 100079 11569548 ~ 11575195 (-) True ptk6a
XM_043246486.1 mRNA downstream 171242 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 223828 11445273 ~ 11451446 (-) True emilin3a
XM_043246489.1 mRNA upstream 59514 11743139 ~ 11747881 (-) True wasb
XM_043246488.1 mRNA upstream 59514 11743139 ~ 11747879 (-) False wasb
XM_043246487.1 mRNA upstream 59514 11743139 ~ 11747878 (-) False wasb
XM_043246496.1 mRNA upstream 65971 11749596 ~ 11764650 (-) False slc38a5b
XM_043246494.1 mRNA upstream 65971 11749596 ~ 11764650 (-) False slc38a5b
TU93421 other downstream 110869 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 110869 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 110869 11562278 ~ 11564405 (-) False G63095
TU93259 other downstream 329416 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 544067 11097002 ~ 11131207 (-) False LOC122349915
TU93692 other upstream 94646 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 113505 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 580069 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 667621 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2125803 13809428 ~ 13863250 (-) True G63933

Expression Profile