RNA id: XM_043246530.1


Basic Information

Item Value
RNA id XM_043246530.1
length 2032
RNA type mRNA
GC content 0.49
exon number 10
gene id nfyal
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12190007 ~ 12197235 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTGTGGCTCATTTTGCGCCATTTTGTCCGCACCACTGTGTTGATTGGGTTTTTGAGATCTGTAGTGGAGCCAATCAGAAGGGTACCGGACAACCGGAGAAACGGTGAGGAAGAAAAGATGGAGCAATACACTGCTACAACCAGTGGGGATCAGATAGTGGTGCAAGCTGCCAATGGCCAAATCCAGCAGCAGGCTCAGGGCACCGTAACAGCAGTACAGCTGCAAACAGAAGCCCCCGTCGCTACAGCTACAGGCCAGCAAGTGCAGACGCTCCAGGTAGTCCAGGGTCAGCCACTGATGGTCCAGGTGAGTGGCGGGCAGCTGATTACGTCTTCAGGTCAGCCCATCATGGTACAGGCCATGTCTGGAGCTCAGGGCCAGACGATCATGCAGGTGCCTGTATCTGGAGCTCAAGGACTTCAGCAGATCCAGTTGGTTCAGCCGGGTCAGATTCAGTTGCAGGGGGGTCAAACTCTGCAGCTGCAGGGTCAGCAAGGTCAGGCTCAGCAGATCATCATACAGCAGCCTCAGACTGCCATCACTGCGGGCCAGAACCAGGGACAGCAGATTACAGTTCAGGGACAGCAGGTTGCCCAAACAGCTGAAGGACAGACTATTGTATACCAGCCTGTGAATGCAGATGGCACAGTTCTGCAGCAggGCATGATCACCATCCCAGCAGGCACCCTGGCAGGCACTCAGATTGTCCAGGCAGCAGGGGCCGCTAACACCTCCACAACCAACAGCGGGCAGGGCACGGTCACCGTTACCCTGCCAGTATCTGGAAACATGGTGAACGCTGGGGGAATGGTCATGATGGTGCCGGGTAGTGGTGCTGTGCCAGCCATCCAACGAATCCCTCTGCCAGGGGCCGAGATGCTTGAAGAGGAGCCGCTGTATGTTAATGCCAAGCAATATCATCGTATCTTAAAGAGACGCCAAGCTCGTGCCAAGTTAGAGGCAGAGGGCAAGATCCCTAAAGAGAGAAGGAAATATCTTCACGAGTCACGGCACAAACACGCCATGCAGAGGAAGCGTGGTGACGGCGGGCGGTTCTTCTCGCctaaagagaaagaagaaatggCCTTGGCCATGCAGGAGCAACAGGACCAGAACCAGGCTGGAGACGAGGCTGTGGCCCAGATGATCCGGGTGTCATAGCACTAGAACTtctactgtgtgttttttttaagtgactcTGAAGGCCCACATTTTCACCATTGTGAATCACCGTCTCCACCGCAACACTAACAGACAGCCCTAATTCATCACGGCCTGTGTTCCTCCTGTCTCGTGTCTTCTACTAAAAGGAGGGGCCCGTCTGTTTTCTCTCAGTGGTCTTGTATTGCTCCAGAGGACACGCATAGAACCATTACTGTTAATGTACGGTGTAATTAATTCAGCTTGcgatttaaaaagcaattaaatagCAAAGTGTAAATCgacccagagagagagagagagaaaacagttaGTAATGACTCATTTACCatgatgttttttaaaggtGGTAGTAGAACAAACAAGAATTTTGGCAATGAATTGCATGAAGACCGAGACGAGCTGTTTGATTTCTACTTTTTAGCATTATGGACGGTTCTTTTCAGGTTTATGAACTTATAAGTGGGAAGTTACATGGAAATGATGTAGGTTTATCTCTTACAAACTAATTGTGGTGTTCGGCGTACTGTATGTGTTTGGCATGGGGAAGAGAGCATTGGGAAAACAATACAGACAAAAAGGgcaacatttttcagaaatcgGCCCTCATCACCAAGGAAACGTATATGGTTGTTTTTCTTTCCCAAGCTTTTATACAGGCTTCATCCATAACAtgaagttattttacattagtGTTTTGATACAACAGTCATTTGTAATTTGAGTGCGGTTTGTGTATCCAGTCACTGTCTTCCTGGCTCATCTAGCTCCTTCTTGGAAATGCAAATGCTCCTCGAGTTATGTTGAATATTGAAGTCATCTAACCTGTATTTTgataaaaagtgtgcaaaatgCATTGTGAAACATCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016602 CCAAT-binding factor complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93769 lncRNA downstream 50609 12104578 ~ 12139398 (-) True G63321
TU93764 lncRNA downstream 55279 12131491 ~ 12134728 (-) True G63316
TU93808 lncRNA downstream 135477 12053131 ~ 12054530 (-) False prok1
TU93778 lncRNA downstream 137028 12051357 ~ 12052979 (-) True prok1
TU93798 lncRNA downstream 167254 12022515 ~ 12022753 (-) True G63350
TU93864 lncRNA upstream 105494 12302728 ~ 12304329 (-) True G63395
TU93874 lncRNA upstream 135222 12332456 ~ 12334605 (-) True G63404
TU93877 lncRNA upstream 138532 12335766 ~ 12336021 (-) True G63406
TU93878 lncRNA upstream 138880 12336114 ~ 12336823 (-) True G63407
TU93879 lncRNA upstream 139642 12336876 ~ 12337194 (-) True G63408
XM_043246467.1 mRNA downstream 522 12172189 ~ 12189485 (-) True ahcyl1
XM_043246451.1 mRNA downstream 18637 12168887 ~ 12171370 (-) True hspa1b
XM_043246457.1 mRNA downstream 21867 12149987 ~ 12168140 (-) True kcnc4
XM_043246535.1 mRNA downstream 98345 12085919 ~ 12091662 (-) True alx3
XM_043246423.1 mRNA downstream 106969 12078239 ~ 12083038 (-) True rbm15
XM_043246424.1 mRNA upstream 2377 12199611 ~ 12213569 (-) True sort1b
XM_043246481.1 mRNA upstream 31458 12228692 ~ 12235738 (-) True amigo1
XM_043246541.1 mRNA upstream 78873 12276107 ~ 12282715 (-) True gnat2
XM_043246455.1 mRNA upstream 118482 12315716 ~ 12324419 (-) True eps8l3b
XM_043246557.1 mRNA upstream 127551 12324785 ~ 12327978 (-) True atp5pb
unassigned_transcript_1295 other downstream 392805 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 410756 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 625602 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 66460 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 154012 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1612194 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2526974 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2582297 14779531 ~ 14781710 (-) True G64228

Expression Profile