RNA id: XM_043246570.1



Basic Information


Item Value
RNA id XM_043246570.1
length 1071
RNA type mRNA
GC content 0.43
exon number 2
gene id lhfpl5b
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11883738 ~ 11891283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGCGAACGAGAAGATGCTTCCAGCCCAAGAGGCTGCCAAAATCTACCACACCAATTATGTGAGAAATGCCAGGGCCATTGGCGTCCTGTGGGCTGTTTTCACCATATTCTTCGCCATCATTACCGTGGTGGTCTTCATTCAGCCCTACTGGATCGGTGACAGCGTCAACACGCCGCAGGCTGGATACTTTGGGCTTTTTCACTACTGTATTGGCAACCCCATCACCTCCGAATTGGTCTGCAAAGGAAGCGTGTTTGATTTTGGTTCAATCCCATCAGGGGCTTTCAGGACCGCTATGTTTTTTGTAGGCACCTCAATGCTCCTTATCGTAGGCACCATCGTGTGCTTGggtcttttcttcttctgcaaCTCTGCAAGTGTGTACAAGATTTGTGCATGGATGCAAACATCTTCAGCTGTGTTGATGGTGATGGGTTGTATGATTTATCCGGACGGCTGGGATGCTCCGGAGGTGAAGCGGATGTGTGGCGAGCGGACGGACAAGTACAAGCTTGGGAACTGCACCATTCGCTGGGCTTATATTCTAGGCATTATCTGCATCCTGGACGCAGGGTTACTGGCTCTGCTTGCCTTCACTCTGGGCAACCGGCAAGACAAACTGTTGCCAGAAGACTTCGAGGTGGAGAATAACGGTAAGAGaaacactgattaaaaatgattttgggaTCAGTTAAGAATGTATTTAATGACTCCTAACATCAGGTTCCACTGGCTATGAGCTGGATAGATTCTCAGTTTGAATGTGCCGATGAATTGATTATTGGTGTATTATAAGATCAATAATGTAATAATCcataaataatatgcatgaaaaataaatacgtttttataCTACCagaattattaatgtatatgaATTTAGAATGTAAACCTGTGGAAGTACAAAATGCACAATGTGTGTGACGTTGTTTCCATTTGTTTATAGATAAAGCCTGAATCCAACAGATTTGAACTGCAGTGGACACGGGACTGGAGATTCTTAgtcacattacaaaaaaaaattaataataatgaacctgaataaactttattttttggcaaatgctgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93738 lncRNA downstream 27676 11855745 ~ 11856062 (-) True G63304
TU93660 lncRNA downstream 60494 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA downstream 60494 11821284 ~ 11823244 (-) False G63254
TU93477 lncRNA downstream 216258 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 218964 11663435 ~ 11664774 (-) True G63127
TU93792 lncRNA upstream 131221 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 134206 12019711 ~ 12019953 (-) True G63347
TU93798 lncRNA upstream 137010 12022515 ~ 12022753 (-) True G63350
TU93778 lncRNA upstream 165852 12051357 ~ 12052979 (-) True prok1
TU93808 lncRNA upstream 167626 12053131 ~ 12054530 (-) False prok1
XM_043246582.1 mRNA downstream 40886 11841181 ~ 11842852 (-) True c8h1orf194
XM_043246577.1 mRNA downstream 43137 11838293 ~ 11840601 (-) True zgc:195245
XM_043246461.1 mRNA downstream 46348 11828122 ~ 11837390 (-) False inavaa
XM_043246465.1 mRNA upstream 85236 11970741 ~ 11974829 (-) True dclre1b
XM_043246540.1 mRNA upstream 91695 11977200 ~ 11983309 (-) True adora1b
XM_043246544.1 mRNA upstream 124983 12010488 ~ 12013150 (-) True zgc:110353
XM_043246585.1 mRNA upstream 165913 12051418 ~ 12053993 (-) False prok1
XM_043246423.1 mRNA upstream 192734 12078239 ~ 12083038 (-) True rbm15
unassigned_transcript_1295 other downstream 86536 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 104487 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 319333 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 378189 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 465741 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1923923 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2838703 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2894026 14779531 ~ 14781710 (-) True G64228

Expression Profile