RNA id: XM_043246600.1


Basic Information

Item Value
RNA id XM_043246600.1
length 1800
RNA type mRNA
GC content 0.54
exon number 11
gene id chmp7
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21337267 ~ 21344907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGAgcgctgttgttgttgttgttgtcttccGGGTGAGCCGCAGTCGTCTTCGTCGTGCTCTTAAACCGTGACACGGAGCCGGTCGCCTTCCTCCCTCCGCCGCCGAAGATTCAAGCAGCATGCGGGTCCCCGCCGATGGATGTCTCGACAAACACTGAGGAGATCTTAGCTGATCCAGCTGCTTGAACTCGAGCACAATGTCGGTGGAGAAGAGGTCTTCGTGTTTCCCGTCGGACTGGGAGGACGACGAGCGAATGGCTTTCTTGTTCTCTGCCTTCAAAGAGAACCGAGATGTTGACAGCACGGACTGGGATGGGAAGATCGACTTCTGGAGCCCTCTGATCGCTGATCAGTGCCGGCGGCGCGGGACGGTGTGCGTGAGTCTGCAGGAGCTGAACGAGAGCTTCAGGAGGAAGGGCTGCGTTCCTCTGGGCTTGAGCACGGTTCTTCAGAGCATGGTTAGAAGCGGGAAGGTGCAGAAGGAATCGGACTTCGCTGCAAACGTGGACTCGGGCTGGTTGTCGTGGGGGGTCGGACTCTTGCTGGTTCGACCTCTGAAGTGGACTCTGTCGGCTCTGCTGGGCAGCGGCAGGGTCCCGCTGGAGGAGTCGTTTGTTGTGATTGACCTGGTCAAAGAAAAGGCTGCGGCGCTCCTGGCGACGTATCGGGCTTCTCCTTTAGCAGCACATTCTCTGTTGTCCTTCCAAGAGCTGCGTGCTCTCTCCTCTCACATCTGTCCCGATGAAAGCTCGCTCTGCCTGGCCCTGCTGCAgctgcagagagagaaacacgTCACCGTCTCGCTCCATGAAGGAGAGAAGCTGGTGAAATTTAGTCAGGCAGGACAAGGCCGCGTATCCCCCGTCAGCGAGGTGGACCTGGGCATCTATCAGCTCCAGCGCAGCGAGAAGCTTCTGGAGGAGAGGGTGGAGGCGTTGGGACAGGAAGCAGAAAAGTGCAAGCAGCAGGCAAAATCGCTGCTTCGAGAGGGGAAGAAATCTCAGGCCCTGAGGTGTTTGCGCGGGAGCAAGCGGGTGGAGAAGAAAGCGGACCGTCTGTTCGCTCAGCTCGAGACGGTGAAGGGGATCCTGGACAGAATAGCCAACTCCCAAACCGACCGGCTGGTGATGCAGGCATACCAGGCAGGTGTGGCGGCTCTGAGGATCTCCTTGAAGGGTGTGACGGTGGAGCGAGCAGAAAACCTGGTTGATCAGATACAGGAGCTATGCGACACTCAGGATGAAGTCAGCCAGACTCTCGCCAGTGGAGCGCCGGATTCTGGTGAGGATtcagaggagctggaggaggagctgAAGTCATTATTGGAGAAAGCCGCCCCAGATAACGACGTGCTCCCGGTGGTCCCAACGCATCCTTTTTCTCCTCCAAGGAAAACGGGTATCCTGGATGCTGACTTTGTCCAGTCTCTGCCCTCTGTGCCTGATTCCGGTCTAGGCATCACAGACGAGGAACTGGACAGAGAACTAAGTCGACTTTCAGTCTCTGACACAGCTCACAGAAGGCCGGAGGCGGCGCAGTGACCGAGCGTTCAGCACAAGCAGCCACTAAAATGGGTTAAACGCTGTCCACTAAAGAAAGCCATCAGATACAGTACTCGTGTGTCCTTGCATTGTAATAAGTCCTATCAAGTCTTTATGAAAAGCCCTTATTCATGTTTGTAATGGCatgtctatttttgttttttaaagatagtTTTAAGAGTGGCCTTTTTGAGTTTGTAAAGTCTGTACAATGTAATATTCtaataaaactacaaattatGATGACAAATAGAGAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0045324 late endosome to vacuole transport biological_process
GO:0000815 ESCRT III complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15053 CHMP7; charged multivesicular body protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97251 lncRNA upstream 311429 21025397 ~ 21025838 (+) True G65769
TU97250 lncRNA upstream 317731 21019292 ~ 21019536 (+) True G65768
TU97238 lncRNA upstream 365260 20958749 ~ 20972007 (+) True rnf122
TU97204 lncRNA upstream 393888 20939422 ~ 20943379 (+) False G65754
TU97431 lncRNA downstream 26235 21371142 ~ 21374625 (+) True slc25a37
TU97504 lncRNA downstream 125083 21469990 ~ 21538982 (+) False LOC122350761
TU97508 lncRNA downstream 149905 21494812 ~ 21495538 (+) True G65913
TU97512 lncRNA downstream 151519 21496426 ~ 21509076 (+) True G65914
TU97547 lncRNA downstream 291214 21636121 ~ 21698404 (+) True G65944
XM_043245992.1 mRNA upstream 12063 21313704 ~ 21325204 (+) False lgi3
XM_043245991.1 mRNA upstream 12063 21315082 ~ 21325204 (+) True lgi3
XM_043247131.1 mRNA upstream 31488 21270648 ~ 21305779 (+) True fgfr1a
XM_043247132.1 mRNA upstream 31488 21270648 ~ 21305779 (+) False fgfr1a
XM_043247133.1 mRNA upstream 31488 21270648 ~ 21305779 (+) False fgfr1a
XM_043246598.1 mRNA downstream 467 21345374 ~ 21355724 (+) True entpd4
XM_043246599.1 mRNA downstream 469 21345376 ~ 21355724 (+) False entpd4
XM_043246920.1 mRNA downstream 14330 21359237 ~ 21372351 (+) False slc25a37
XM_043247456.1 mRNA downstream 168403 21513310 ~ 21538986 (+) False LOC122350761
XM_043247455.1 mRNA downstream 169306 21514213 ~ 21538986 (+) True LOC122350761
XR_006251700.1 other upstream 6107 21331042 ~ 21331160 (+) True LOC122351138
XR_006251699.1 other upstream 8463 21328686 ~ 21328804 (+) True LOC122351136
XR_006251690.1 other upstream 10803 21326346 ~ 21326464 (+) True LOC122351127
XR_006251543.1 other upstream 132921 21202481 ~ 21204346 (+) False ankrd39
TU97555 other downstream 406855 21751762 ~ 21754720 (+) True b2ml
TU97610 other downstream 594239 21939146 ~ 21940924 (+) True G65992
TU97623 other downstream 604981 21949888 ~ 21961845 (+) False G65995
TU97619 other downstream 606506 21951413 ~ 21953685 (+) False G65995
TU97622 other downstream 606506 21951413 ~ 21961845 (+) False G65995

Expression Profile