RNA id: XM_043246610.1



Basic Information


Item Value
RNA id XM_043246610.1
length 832
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC122350264
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1447000 ~ 1454530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGCATGCGCAAACATGCACGCACGGTTCAAAACAATAGTCTCTTGAATGTGTGAGATTTGTTATTATACATCATAAACAGCAGACGTACGCTCTTATTGAACGCCACACGCATCAAACCACAACATTTTCCTCTCAGGAGGCTGAGATATAAAGCGGACCCGTGCTGGAGCGGCGTTAAGAAGACCCCTGTTTTGTTGACGATGTGCAGGCTGAGTGTGGGATGGACACGTACCCGGCCGTGAGAGACGACCCGTCGGATGCCGCCAGGCAGCAGGAGAGACACTATTACCTGCTGTCAGAGCTGCAGACGCTCGTGAAGGACCTGCCCAGCTCGTTCCAGCAGCGTCTGTCCTACACCACTCTCAGTGATCTGGCCCAAGCGCTCATCGACGGGACGGTGTACGAAATAGTGCAAGGACTGCTGGACATTCAGCACCTGACGGAGAAGAACCTCTACAACCAGAGACAGAAACTACACAGCGAGCACagagctctcAAGCAGGATTTGGTTCGGAAGCACAAGCAGGCTCTGCAGATGTGCAAGTCTCACAATCTGTCCGTTGTGAAAAGCAACCAGAGAGCGGAGACTGAGGCTCTTGATCAGCGGGTGAGAGAAGAGCAGAGGATGATGGACGAGAAGGTGGTGGCTGAGATGGATCAGAAGGTTCTGGATCAGCAGAACACTCTGGAGAAAGCAGGCGTGCCGGGTTTCTACATCACCTCCAACCCTCAGGAGGTGATGATGCAGATGAATCTTCTGGAGCTGATCCTGAAGCTGCAGCAGAAAGAGAGCGGTGTCTGGATCTCTTCCTGACCGGGCGTGGATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89019 lncRNA downstream 134856 1311885 ~ 1312144 (-) True G60189
TU89018 lncRNA downstream 167697 1279000 ~ 1279303 (-) True G60188
TU89017 lncRNA downstream 177616 1268798 ~ 1269384 (-) True G60187
TU88997 lncRNA downstream 180191 1232076 ~ 1266809 (-) True G60169
TU89043 lncRNA upstream 3440 1457970 ~ 1514295 (-) True G60199
TU89031 lncRNA upstream 33724 1488254 ~ 1493160 (-) True G60198
TU89035 lncRNA upstream 33724 1488254 ~ 1493160 (-) False G60198
TU89086 lncRNA upstream 87916 1542446 ~ 1544129 (-) True G60217
XR_006251559.1 lncRNA upstream 196390 1650920 ~ 1655010 (-) True LOC122350073
XM_043246612.1 mRNA downstream 90047 1349171 ~ 1356953 (-) True LOC122350266
XM_043247081.1 mRNA downstream 194484 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA downstream 194484 1250060 ~ 1252516 (-) True pym1
XM_043246297.1 mRNA downstream 198636 1244834 ~ 1248364 (-) False LOC122350094
XM_043247249.1 mRNA upstream 39975 1494505 ~ 1523464 (-) True dtx1
XM_043247339.1 mRNA upstream 107016 1561546 ~ 1606609 (-) True LOC122350657
XM_043247340.1 mRNA upstream 173123 1627653 ~ 1646362 (-) True LOC122350659
XM_043246173.1 mRNA upstream 255828 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 255830 1710360 ~ 1714216 (-) False LOC122349997
TU89022 other downstream 90069 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 287754 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 308848 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 715380 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 876027 565886 ~ 570973 (-) True ccl27a
TU89089 other upstream 122275 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 122275 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 146991 1601521 ~ 1605113 (-) False LOC122350657
TU89063 other upstream 278334 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 294617 1749147 ~ 1753916 (-) True LOC122349998

Expression Profile