RNA id: XM_043246625.1


Basic Information

Item Value
RNA id XM_043246625.1
length 5508
RNA type mRNA
GC content 0.48
exon number 25
gene id agtpbp1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22290751 ~ 22318814 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGCTTCCCGGGTGCTGATGTTGCTGAGTCAGCTGGAAAGACAGAATGAGGAGCCCAAAGTCTCTGATAATGATGCCATCCGGCAGATCACAGGCAAAATCCTTCACCTCATCCAGACTCAAgTTCCCCTTCACATTCTCAGTCATTCTCTGCTGGTGACGGTCATCGATCTGCTGGTCTTTTGAAGGCGCGTATGTTTTGACTGACAGCACCTGGGCAGTGGGAGGGCTCTGCTTCGATGTGAAATATGATTACACCAGGGTAGAATTTCCCCAGTATCAGTGTTATGGATGAAGCGCTGGAGTGCATTCAAGTTATGAGAAGAAGCGTAAGATTGGGTCGGATTCGTGTTGAGAATAAAGATGGACTATAGAAGCCATGCCAGAAGGAAGACCGGTTTGTGTCGGCCCCTGTCCAGCCCTGAGAAGACCCGTAAGGAGGTGGCGTCTAAAAGCTCTGGTGGGATGGAGATCATTCTGTCGTCTCTGGAGAATACACAGGATTTGCAGACCACTCTCAACATCCTCACTATCTTGAACGAACTGTTGACTGTGGGCGGAGGCCGCCGGACCGGGGTGTTCGTTTCTAAAGGAGGAACAGCCATTCTGATGCAGCTGCTGGTGAGCTCCAGCAAAGACCCCCCGGCCAGCGAGGAGCTGATGCTTCACGTTCACTCTCTGCTGGTCAAAGTCGGCCCCAAAGACAGGAAGTTCGGCGTGAAAGCGCGTCTGAACGGGGCTCTGAATGTGACTCTGAATCTAGTGAAGCATAATCTGCAGAACTACAAGCTGTTGCTGCCGTGCCTTCAGGTGCTTCGGGTCTACTCGAGCAACCTGGTAAATGCAGTGTCTCTGGGAAAGAGTGGCGCTTTGGAGATCATGTTCGAAATCATCGGACCCTTCAGCAAAAAGAGCACCACTCTGCtgaaaGTGGCCTTGGACACACTGGCATCGTTACTGAAGTCTGGAATGAATGCCCGTCGGGCAGTGGACAGAGGATACCTTCCCACGCTACTCACAGTTTATCAAGACTGGCACCGCAATGACACGCGTCACCGCCATGTGGTCATCCGCAAGAGCATTCTGGGATGCATCAAAAACCTCACTAACATTAAGCTTGGCAGGAAGGCCTTCATAGACGCCAATGGGATGAGGATCCTTTATAACACATCCACTGAGTGCCTGCCTGTCCGGACACTGGATCCTCTGGTCAATACCTCCAGCCTAATCATGAGGAAGTGCTTTCCAAAGAACCGCCTGCCACTGCCTACTATTAAAAGTGTCTTTCACCACCCGCTACCACACATACCAGCAGGTGGACCGGTGGCGCAGCTGTACAACCAGCCGCCTGGAGTGGACGATGTAGTTGATGAGAGCGACGAGAATGAGGCCACGGAGGTCGACACAGAAAATGACACGGAGTATGACGAGGATGATGCCGGACACAAAACACAGAATGACGACATAGAGACCGATATCAACAAACTGCGGCCCATACAGATGATGACGCGTCCGTTTGATGAGCTCAGAACCTACGAGTATTTCTGTCGGGAATTCAGCGAGAATTTTGAGGATGATGACTTCGAGAGCCCCAGATCTGTCATCCCTCCATTGAGCGTGAACTCAGAGCTCCATCGTCCCATCATCATTCCCACCACGCCGAGCTCCTTGGGTCCTCAAAATAGACGTCTGCTTCCAGAGGACCTCCTGACGCCAAACGAATCGCCTCTGGAGCTGGACAGCATTTCCATATCGAAAAGGCCAGAGAGCGCACCGGACCCCGATCTGGTCTGTAGTTTGGGCCGTCTGGTTCTAGATGTGAACGGAGGCTCTGCGGACGGACCTCAGGACGAGGCCGGGGAACAAGCGGTGCTGGAAGTGCCGGACACCGCAGCCCTGCTGCCGCTGCACGACCCTGACCTTTACCTAGAGATTGTGAAGAGCACCCGCTCAGTGCCGGCCTACACCGAGGTCGCTTACCCAGATTACTTCGGGCATGTGGCACTCAACCTCCGCGAGCCCATTCTAGAGAGGGTTTATGGAGTGCAGAGAACAAAGATTTTCCAGGACATTGAGAGGCTCATTCACCCCAGTGACATCCTCGATAAAATTGTATATGACTTAGACATTCAGAGTTGTCCAGTAATTGAGAACGGGGAGTCTCTCAAGTTCAACTCGAAGTTTGAGTCCGGAAACCTACGGAAAGCAATACAAGTCAGAAAGTTTGAGTACGACCTGATCTTGAACTCTGATATCAATAGTAATCACTACCACCAGTGGTTCTATTTCGAGGTGGGCAATATGCGTCCTGGAGTTCGTTATCGATTCAACATAATCAACTGTGAGAAGTCCAACAGCCAATTTAATTACGGCATGCAAGTGCTCATGTACTCAGTACAGGACGCCATCAATGGCAGGCCCCATTGGGTTAGAACAGGATCAGACATCTGTTACTACAAGAATCATTTCTCACGAAGCTCCATTGCAGCTGGCGGTCAAAAGGGCAAATCGTACTTCACCTTGACCTTCACTGTGACCTTCCAGCATAAAGATGACGTTTGCTACTTTGCCTACCATTACCCATACACCTACTCAATGCTAAAGATGCATCTGCAGAAGCTAAGTGCTTTGCGCACAGCTCAGATCTACTACAGACAGGATGATCTGTGTGAAACTCTGGGAGGAAACAGCTGTCCCCTGCTCACCATCACAGCCATGCCTGGATCATCCAGCAACGATCACATCGGCCAGTTTAGAAGCCGTCCAGTGGTGTTTCTGTCTGCGCGGGTACATCCTGGAGAGACCAACTCTAGCTGGGTGATGAAGGGCACTCTAGAGTATCTCATGAGCTGCAGTCCTCAAGCTCAAAGTCTAAGAGAGAGCTACATCTTCAAAATCATCCCCATGCTCAACCCCGACGGCGTCATTAATGGAAATCATCGTTGCTCTCTGAGCGGGGAGGATCTGAACAGACAGTGGCAGAACCCCAATGCCGAGCTGCACCCCACCATCTACCACTCCAAGAGCCTCCTGCAGTACCTCAGAGCTACAGGAAGAACTCCACTGgtgttCTGTGACTATCACGGCCACTCACGGAAGAAGAATGTTTTCATGTACGGCTGTAGTATTAAGGAGACGGTGTGGCAGACCAACGTCAACACCAGCACCTGTGACCTACACGAGGACCTGGGATACAGGACTCTGCCGAAGCTGCTGTCTCAGATGGCTCCAGCGTTCAGCCTGTCCAGCTGCAGCTTTGTAGTGGAGCGCTCTAAAGAGGCCACGGCGCGCGTGGTGGTGTGGAGAGAGATCGGCGTTCAGCGCAGCTACACCATGGAGAGCACGCTGTGCGGCTGCGACCAGGGCAAATACAAGGGGCTCCAGATCGGTACAAGTGAGCTGGAAGAAATGGGCTCCCAGTTTTGCTTGGCTCTGCTCAGGCTAAGACGCTTCACATCGCCCTTGGAGCTCCACAACCACAACTCCCATCTGCTGGACATGGAGAACGACCTGATAGACACCCGCAGCATCCCCAACATCACCAGtcCCACCACATACGTGTTGGACGAGGATGAGCCGGCGTTCCTGGAGGAAGTCGACTACAGCGCCGAAAGCAACGACGAGAATGATCCCGATCTTGAACCCGATCTCCAGGATAACCATGCCCTCCCGGACCCTAATTCCGACTCGGAGTTCAGCCGCCAAGACTCACTTAACTAAACCCGAAGCAGACTCACTTTAGTGTAAGGCTTTAGCTGATCTCACCGGTCTTTTGCCCGTGTACTACATCACCCGTGTTTGCCTACTTGCCTACTTTATAGAAGCTGGTTTGTTCACAAAGCCGACTTAATTTAGAGTAACTCAAACATAACATGTTAACGCAGAAGATCCTTTTGAGGCCGTGATGCTTATAGGTGCTTCACAGGTTACGGCATTATTACTAACGTTAGAAATCAATCTAAAACATGCCGTTATTAAAATGGAGGAAAGGTTTTGTCGCTATTTactcattttttccaaaaaacgtTCAAAATTCTGTAGAACGCAAAAGTAGATGTTatgaagtatgtttttttttttgtagttttaaaggggtagttcagcCAAAAGTCAATATTTGCTGTTCATTTCTCAGCCTGAAGTCCTTCAAGAAATAGGTGGCTTTTTCTTGAGTAGAACAGTAAAGAAGAGTTTTAGCTGAAACCGTGGTCCTCAGTGATTTGTAAAATGATCTTTAGAAGCAAAAAAGCATATGCAGGCAACGCAAAATGAATACCAATGGCTCTCGATATATATATTGAGGCCGGAGCGAAACGTTCGGTGTGTGCAAGAAACTCAACGTTATCTGTAATCCAGAGCTTCACTTAAAACGGCGAGTATGTAAGGGTCTGGATAACGTTCGGGGTCTTGCGTGGACCAATCGTTTCGCTTCATGAGGCCTCAGTGTATCATCAGGAGCCATTAGTATCCATTGTGTGTTATTTGCAGTCCCAGgcaacaattaattgcaattaagtttttgtttacacatatattatgtgcaCAAAAACTTTGGATGCGAATAtttgttgcccagcactaattgCTTTTTTTGGCTCTtcaaaattactattttatatatatatatatatatataaaaaaaaacacaggccaAACCtctttaatgaagaaaaagccACCTACATTTTAGAAcggcaaatgttcatttttgagcCAACTATCTCCACTATTACGTGTTCCACAGAAGAGCAGATTTTGGAAGGAGTAAACGACGGTAcctttaaaactgcaaaaacgCAAGAAATCGGATGAAATGGTCAATTACACttattaacaaaaatgcaaCGCTATGTGCTAAACGGTCTCTAATTTCACAGTTCTGGTGCTATATTATTAAAGGCCATGACCATTTTATAAACGCCGGTGTTTCGTTGACTCGCTTTTGATTAAGAACAGCTGGTACGGCTGTAATCCTGATGCAACGTGACATACGGTCATCTAACAAACCACAGTAACATCACCACGAGGACAGGATCACCGCTGCACGCTCGTAACCTCACAGTGCAACAATGCAGTCTAATGAATGTAACGTCACTCTTACTCTCACCCGCTAGGACCTCCGCGAGGCCGCAGCGCTAGATCAGTATTGTTTGTGTGAGTGCGCGTTCACGGCACATTTTGTGGCTGTACTTGCTTTTCGATTGGGAGAGCTTCCgtattttaatttagatgttaatatttatttgtcgCGTTTGTATAAGTAGTGCATGGTTTTTGGAAGTCgcctttttaatttatattattcgTTTTTATTGGGAGGAAAGGAAGGTAAAAGTTGATTTTCGGTGCGAGTGTGCTTGTTTGTGTTCGTGTTCGTTTGATGTCAGCAGTTGGCCAAAGTACTAAATGTGTGTATGGGGTAGAGAAAAATGTATACGTTTGGTTGTGTTTGAATGATTGTCAAACTTTGATTGAAAGTATGGGTAATAAACAACTAAGTTAAACTCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0009790 embryo development biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97674 lncRNA upstream 5593 22288308 ~ 22288847 (+) True G66024
TU97672 lncRNA upstream 9008 22283734 ~ 22285432 (+) True G66022
TU97639 lncRNA upstream 51147 22010649 ~ 22243293 (+) False G65998
TU97902 lncRNA downstream 193365 22512179 ~ 22513245 (+) False G66183
TU97903 lncRNA downstream 193365 22512179 ~ 22513245 (+) True G66183
TU97910 lncRNA downstream 211439 22530253 ~ 22531750 (+) True G66189
TU97912 lncRNA downstream 214249 22533063 ~ 22534817 (+) False LOC122350000
TU97916 lncRNA downstream 214249 22533063 ~ 22534817 (+) False LOC122350000
XM_043247425.1 mRNA upstream 287284 21965074 ~ 22007156 (+) True LOC122350739
XM_043247466.1 mRNA upstream 329877 21963465 ~ 21964563 (+) True LOC122350768
XM_043247858.1 mRNA upstream 334541 21950079 ~ 21959899 (+) True LOC122351030
XM_043247857.1 mRNA upstream 334541 21957781 ~ 21959899 (+) True LOC122351029
XM_043246220.1 mRNA upstream 345877 21944819 ~ 21948563 (+) True si:ch211-198o12.4
XM_043246360.1 mRNA downstream 51908 22370722 ~ 22378446 (+) True hnrnpk
XM_043246365.1 mRNA downstream 60589 22379403 ~ 22382744 (+) True c8h9orf64
XM_043246361.1 mRNA downstream 66389 22385203 ~ 22394002 (+) False gkap1
XM_043246363.1 mRNA downstream 66546 22385360 ~ 22394002 (+) True gkap1
XM_043246362.1 mRNA downstream 66546 22385360 ~ 22394002 (+) False gkap1
TU97654 other upstream 173644 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 176606 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 329882 21963514 ~ 21964558 (+) False LOC122350768
TU97624 other upstream 332595 21951413 ~ 21961845 (+) False G65995
TU98063 other downstream 665226 22984040 ~ 22985584 (+) False mfn2
TU98168 other downstream 735812 23054626 ~ 23151947 (+) False prdm16
TU98282 other downstream 1313569 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 1433754 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 1434647 23753461 ~ 23783631 (+) False acot7

Expression Profile