RNA id: XM_043246643.1


Basic Information

Item Value
RNA id XM_043246643.1
length 2160
RNA type mRNA
GC content 0.42
exon number 5
gene id plp2b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22661149 ~ 22673282 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctcccgtgATTTACCCTCAAGACACTAGAGTAGAAGTACACCAAAGCTTTTAGGCGACGCCCCGCGCACTCACGCTCTCCAGTCCGCCTCAGTCCGACGCGCTCAGGAAGTCTGCTGAGTTACgcatcagataaaaaaaaaactacgttAAAATTTCCTCGTCgccgtattttttttttttttttttttacagaatcgCGTTTGTGAACGTTTGCTGGTGCGCCCGTGTTTATAAAGAAAGCGTTATTTCATAGGGAAACATCTGCAGGATGGCAGAAACCGAGGGAAGTCCGTTAGGAGGCTGTTTGGAGAAACTGAAGAGCTATGTGCGAACTCGGAAAGGAACGATCCTGGCCGCTGAAATACTCATCAGTTTCATCATCCTTATCTGTTACGCCGCGTCCACGTATGGCGGCTATTCAGCGGTGGCCATCTGCGAGATGGTCTTTGCCATCATCTTCTTCGTTGTCTTCATGATGGGGCTGGATAAACAGTTTCTGGTGGTGAACTGGCTCTGGAGCGATCTGATCCGTGCTGTAATCGGTGCGGCGCTTTATCTCATAACCTCTCTGATCTGTGTGATCGGCGGCTCTGGAGACGGGGCTCGCATCGCTGGAGGGGTGTTCGGTCTGCTGGCTGGGATCTTGTTTGCTTACGATTCCTACATGATTTTCATGGAAATCAAGAGCAGCAGACAGCATACAGCAGCTCCCACAGGTCGCTGACGGCCGCTGATGGCAGCACTGGTATCTCAGAGAAAGCTCTGCCGCCTCACATGCCCGCTTTTACTGTCGTGTAGCTATAACGACTTAACCTGTCTAACTGCTCCCCGGTTATTTATTTCGCGTctcccctttttgttttttaacagacGACACCGTTTGAAACTGCTTTCCCCACTACAACATTAACAGCAACCAAAACACGGAGGGCAAGTCTAAAAACGGCAAAAGGAGTGAATTCCCGAGAGACGAAGAACGCAAAAGGAATGAAAAATTACACAACTAAAGGGGTTTATGTACAAAAAAGGGGTTGAAAAGGAAGGAACGGAAGGCCGTCGGCATCCAAAGATTCATTCCGTCATCTCGGTCAGGGCGGCTTTCGTTAAAACGATCTGTTTTTGTTGGCTCGCTCGGTTACAAAAGCACTATCACGACATTTAATAACATCAGATCAATCTGAATGCAGTGCTCAGAATCTTCCCATTCTTTACTAAGACTAGTTTCGACCAAGTCGTGATTAGTTTGTTGTGTCGGAAAACTTGATTCAATTCAGTctggtgctgttttttttttttaacgatgaAACATTAAGGTTGcttaggtttttatttatggtGTGAAATTCCACCGTAATTTTTGTAACTGtaactaaattttaataattcttgattgttcttgtgttttgtgctcGAACTAACTTTGAAGCTTAATCAAACAGGATTCGAGACCGATATATTCAGCTCAGGTGCAGttttaggtattttttttttgttttgtttttaactgaaaatgaatgaatctcAGCCATAATATCTTCATGTTTGTACTATAAAAGGTTCAGACGTCCATGTGTTGGTACACGTTCGTTTTCTAACATATTGCCATTAAACCTCTTACCTCAAGGGTTGCTTATCGTCTGGATGCCATAAGTATTTTTTTCGTTCTGTAAGACACTGATCATATATTAGACATGTCTTCATTTACAGCCCCTGGACTCTGGAATAGGACACAGTTTTTGTCAGAAGCTTGTTCGAGGTGGAGATTTGAAATCTAGTTTTAGGAGGACACACTAATTTGGCCTGACGTTTTTTCCCCTGCTTGGAAACCGTTTATAACATGTAGCATTTTTTGTTAACCATTAGTTCAACCGTTCTATTAGTTAAAGACGCTTTACTCTCATGTCTGTATTGTTTTTGGACCTCACCTGTACTCCAGTGATTTGTTGAAAGCATTTATTAGTGAGATGGTTTCAGGTGGCATCACTTGTGTAAAAATGATTAACTCAGGACGATCTGCTCgtttaaaacacacttttaaagaaacacttcGTTGCATTTTTTTAGAAGTACAGCACAAGATGTAATTCTGTAGGATGTATGCCTCTAATTGGTATTGCTGGTATTTCgatgacatttaataaaaggcTGTTATAACTTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97912 lncRNA upstream 126332 22533063 ~ 22534817 (+) False LOC122350000
TU97916 lncRNA upstream 126332 22533063 ~ 22534817 (+) False LOC122350000
TU97910 lncRNA upstream 129399 22530253 ~ 22531750 (+) True G66189
TU97902 lncRNA upstream 147904 22512179 ~ 22513245 (+) False G66183
TU97979 lncRNA downstream 49220 22722502 ~ 22723361 (+) False mfsd2al2
TU97981 lncRNA downstream 49220 22722502 ~ 22723908 (+) False mfsd2al2
TU97971 lncRNA downstream 51300 22724582 ~ 22727444 (+) True fkbp1aa
TU97972 lncRNA downstream 51300 22724582 ~ 22727444 (+) False fkbp1aa
TU97973 lncRNA downstream 51300 22724582 ~ 22727444 (+) False fkbp1aa
XM_043246068.1 mRNA upstream 1902 22647848 ~ 22659247 (+) True sypb
XM_043247882.1 mRNA upstream 102954 22554867 ~ 22558195 (+) True LOC122351043
XM_043246014.1 mRNA upstream 112091 22541798 ~ 22549058 (+) True LOC122349889
XM_043246176.1 mRNA upstream 120916 22532468 ~ 22540233 (+) True LOC122350000
XM_043246168.1 mRNA upstream 167185 22459937 ~ 22493964 (+) True opn7d
XM_043246638.1 mRNA downstream 607 22673889 ~ 22709558 (+) True prickle3
XM_043246639.1 mRNA downstream 607 22673889 ~ 22709558 (+) False prickle3
XM_043246640.1 mRNA downstream 13144 22686426 ~ 22709558 (+) False prickle3
XM_043246608.1 mRNA downstream 36813 22710095 ~ 22714115 (+) True fam110a
XM_043246606.1 mRNA downstream 42097 22715379 ~ 22723079 (+) True mfsd2al2
TU97654 other upstream 540353 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 543315 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 696591 21963514 ~ 21964558 (+) False LOC122350768
TU97624 other upstream 699304 21951413 ~ 21961845 (+) False G65995
TU98063 other downstream 310758 22984040 ~ 22985584 (+) False mfn2
TU98168 other downstream 381344 23054626 ~ 23151947 (+) False prdm16
TU98282 other downstream 959101 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 1079286 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 1080179 23753461 ~ 23783631 (+) False acot7

Expression Profile