RNA id: XM_043246655.1


Basic Information

Item Value
RNA id XM_043246655.1
length 6144
RNA type mRNA
GC content 0.47
exon number 23
gene id plch2a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23482895 ~ 23583377 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACAAAGAGCTTTCAAATGACAACTTCCTTTACCTGCGGTGTGGAGCCGTGCGCCTGAAGCTTTTGCCCTGCAATGAAACAAGGCATATTCTTTGCACGAAAGCGGATCAGAGCTGTAAAACCGGTGCCTGGAGAAGTgtttcactcactctcacatcATCTCCAGATCACTCTCTGAACTACGTGCTTCTTTTTCCCTCACAAAGGTGTGGTTTTGCTGCAGGTCACTGGCACACTGACCTCGTGTCTACAGGTCAATTACTGGACGTGGAGCTCCGTCAGACGGATGTAGCGCACCTCCGACCACATTCACTCCCAAACCCCGACACTGAACATCTGCTGAACATCCTGCTGAACACTGGAAACCAGAGGAGCTTTCTTTGTCAAGAGCACCAAACGAAAACTTCTGGGGCATTCGCCTGTGAATTTCTTTTAGCAATATGGATACGGTATCTCTAAACACCTCCCTGTTCTCTGGCGGCCAGAGCATCAGTACGGATTCTCCCAATTTGTCCATGAGGTCTGTGAGCTTCATCATCGACACGGATTCGTCCCGCAGCAGCACGCTCTTACACTGGAACTTCTTCCTGGCCGCCAACTACATCAGTGTGGTGGAGAAATGCATGAGCTCCATGCAGACGGGCACTCAGATGGTGAAACTGCGTGGAGGATCCAAAGGCCTGGTGCGCTTTTTCTACTTGGACGAACACAAGTCCTGCATCCGCTGGCGGCCCTCTAGGAAGAATGAGAAAGCCAAAAtCCCAATCGACTCTATTCGGGAGGTGTGTGAGGGGAAGCAGTCAGAGATCTTCCAGCGGTATGCCGACGGTAGCTTTGATCCCAACTGCTGTTTCAGCATCTACTATGGCGAGCACATGGAGTCTCTTGACCTGGTGTCAGGCACAGGAGAAGAAGCTCGCACCTGGATTACTGGCCTTAAGTACCTTATGGCCGGCATCAGCGATGAAGACAGTCTGGCCAAGCGACAACGCACTCGTGACCAATGGCTGAAGCAGACCTTCACAGAGGCTGATAAGAACGGAGACGGCTGCCTGAGCATCAGTGAAGTGCTGCAGCTCCTGCACAAGCTCAATGTCAACCTGCCCAGACAGAAAGTCAAACAGATGTTTAAGGAGGCAGACACTGATGACAACCAGGGCACTTTGGGATTTGAGGAGTTCTGCTCTTTCTATAAGATGATGTCAACGCGGCGCGATCTGTACCTGCTGATGCTTACCTACAGCAACCATAAAGACCACCTGGACACAGATGACCTCAAACGCTTCCTCGAGATTGAACAAAAGATGACAAATGTCTCAAAGGAGCACTGCCTCGAAATTGTGGCCAAGTTTGAACCTTGTCCTGAAAACCAGACTTTGGGTGTCCTTGGTATTGACGGTTTTACGAATTACATGCGCAGTCCTGCAGGGGACATCTTCAACCCTGAGCATTACGAGGTGAACCAGGACATGACGCAGCCTCTCAGTAACTACTTCATCGCTTCCTCCCACAACACCTACCTGATGGGCGACCAGCTCATGTCCCAGTCGCGGGTGGATATGTACGCCTGGGTGCTGCAGGCCGGCTGCAGATGTGTGGAAGTGGATTGCTGGGACGGACAGGATGGAGAACCAATCGTACATCATGGCTACACCTTGACTTCCAAAATCCTCTTTAAAGATGTTATCGAAACTATCAACAAATATGCGTTCATCAAAACACAGTATCCAGTGATTCTGTCCATTGAGAATCACTGCAGCGTCCCTCAGCAGAAGAAGATGGCTCAGTATCTGACTGAAGTATTGGGTGATAAACTGGACGTGTCTTCCATCCCTGCTGACCCGTCTGGTCTTCTGCCTTCACCTGAAGCCCTAAAAGGCAAAGTACTCATTAAGGGTAAAAAACTGCCCCCAAATATAGACGAGAATGCAGAGGAGGGGGACGTTTCTGATGAAGACAGCGCCGATGAGATGGAGGATGACTGTAAGCTGATGAATGGAGATACGTCTATGAACAGGAAGCAGGCGGAAAACGTTGCAAAAAAGAAATTGGATAACCTCATGAAGGAGTCAAAGATCCGCGACCGGGAAGATCCGGACAGTTTTACTATCGCAGCCCTGCCGCCGTCGGGAAAACATGACAAATCACCACTGAAGggAAAAGCAGAAGACAGCACTGACACTGGAGACGAGGCCAGCGCTGGTGGCACCAAACGTCTTGGTAGATCTTTCATGGGGAGCTTCTCCAAACGCAAGAAAAAGACAAGTAAAGTGAGGAAGTCCTCCAGTTTTGAGGACACAGACACGGATCAGGAGAGCTCGAGTGGGGCGTCTAAAGCACCAGTGCATCACAGCAGaaagaaaaaaacaatgaagtTGTCGAGAGCACTTTCTGATCTGGTGTACACGAAATCTGTGGGCACACCCGACTTTGAGGCACAAGCGGGCAGCAGCGGTTGGCAGGTGTCTTCGATGAGCGAGACCAAGGCCCATCAGTTAATGCAGCAGAAGCCGGTGCAGTTCATGCGATTCAACCAGCGCCAACTCTCGCGTATCTACCCCTCCCCTTACCGCGTGGACTCCAGCAACTTCAACCCACAGCCCTTCTGGAACGCCGGCTGCCATCTGGTGGCTTTGAACTACCAGACAGAGGGCAGAGTCCTTCAGCTCAACAGAGCCAAGTTTTATTGCAACGGCAACTGTGGTTACATCCTGAAACCTGCCTGTATGTGCGAAGGTTCTTTTAATCCAGTGGTTGAGGATCCTTTACCAGGGCTGTTGAAAAAACAGTTAGTTCTTAAGATCATCAGCGGCCAGCAATTGCCCAAGCCTAAAGACTCCATGCTGGGTGACCGAGGAGAGatAATCGACCCATTTGTGGAAGTGGAGATTATCGGTCTACCAGTGGATTGCTGCAAAGAGCAAACCAGGGTGGTTGATGATAATGGATTCAATCCTATGTGGGAGGAGACACTCGTCTTCACTCTTCACATGCCAGAGATTGCTCTTATACGCTTCCTGGTTTGGGACCATGACCCAATTGGCCAAGATTTTATTGGCCAGAGAACCATCGCCTTTAACAGCATGATTCCTGGTTACCGACATGTGTATTTGGAAGGCATGGAAGAAGCTTCCATCTTTGTTCATGTTGCAGTGAATGACATAACCAGTAAGGTTCGAGCAGTCAGTGGTATAAAAGGACTCTTTCACAGAAACCCAAAGCAGGCATCTCTCGACAGCCATGCTGCTGCTCTGCTCAACCGTAAGAGCGCCTTCGGGGCTCACCTCCTGCGCCGCACAGCCAGTGCCCCCACCAAGGGCCAACCCAAAGTCAAGAGGGGCTTCCCTGAGATCTCCATTGACACAAAAGATTGCAGCTCGGAGGGCGCCAGTGAGGAGCGAGAATCTGAAGAGGGGCCACCTGTCCACCACAACGGAGATACTGCATCTGCAAAATCATGGGGTCACGGCACCAATGGGCAGCTTCACCCTGATGACAGTAAAGAAAATACTGAAGTGCAGAGTCCAACTCCATCCCTGAACACTTCATGTCTGGGATCCATTACTGAGGAATTTCAGGAGATCAGTCCTTTGACCTCCACACAATGCCCTGTGGATACCTCACCACATTATCCCTCCACCACATTGTCTTCACCATCCACAGCAATAACAACAACTTCCAATGGGGAAAATCTCAGCCCCGAGGACATTCGAAAATCATTTGCACTAACCCAGTATATCGGCCCATATAGCACCAGTGGCGAGGATTCTGGGAACAACCACATCAACTCTTCACTTTCCACAAATTACCTTGACATTGGATGTAATACGCCCCCATTGCCAGACCAGGTAGATGGTGAAGTTGAGCAAAAGGCAGTCACTGATCCCAACATTCCTGAACTAAAAACACAGACTCTAGAGACAGATGCCATAAAGGAAACGACTGCCACTCAAAGCTCTCAAAGGATGCAGGCGTTGAAGGGGGTGTTCGACAGAGACATTGGACGAAGCATGCAAACAGGACTGAGGACCCCAGTCAGAAGGACCAAAAGTGAAGGACAAATGAAGGCAGTGATAAAAACAGATAGCCCATCTGTGGTCCCCGAAGTCTCTATTGACGCCACTTTAAACGACAGGCTCTGGAGCAAACTCGACCCCAGCAGCCATCGGGATAGTGTGTCATCGTCTTCCAGCATTTCGTCCAATGACACTGTGATTGATTTGTCGTTGCCCAACCTTTCCAGAAAGAGCCTTACCTGTCTTAGTGCAGCCCGGGACTACTCAGAAAGCCAAGCCAACAGGACCAGTCAGCCTCGATCGACCGTTGTAGCGTGCAACATCTCGCTCGTCAGCAAGAGCAAGTCCAACCCCAACCTGCGGGATGGTGAGATGTGCGAGCCAGAGGACGAGTTACAACCTCGGCCTTTGGTTGCTGAGAAAGACCCCATCCGGCCCATGCAGAGACGGCACACGTGGAGCAGGTTGTACATGGAGGGTTTAAAGCAGTCATCCACTCTTGCTGCTTCTGCTGGCTCCAAGAGGTCAACCATCCCCTCGGCCAAAGACATGGACAGCAGTTCGAAATCCAAGAGTCTTGGAGATCTCACTTCAGACGACATCGCCTGTAATTTTGAGAGCAAGTATCGCAGCATTAGTCGCAGTTTCATTGTGAGGCCAAGCCGGCAACTAGGGAAGACTCTTAGAAAGCCCCAGAATGATCTAACAGAGCAGCTGAAGAGGCTCACCGATGTGGAGCCTCTCACTAGCAAAGACTTTGCTCAGTGCAGGAATGATTCCGAAACAGgtcaggaagaggaggagatgcTTCCTTTGCGGAGGAGCTCCTCACGGAGCCAAAGTCGAGTGAGATACATCGCTAACCGAGCCAGGCAGGCCCAAGAGAGGCAACGGCTACAAAGCCTGACTAGGACGTCTGGGAGCCCTATTGAAGAACGTGGCAATCCTGAGGGAGCTTGTAGTGTGGCCCACAGTCCCTGTGTTAGCTTGGATCTGTTGAGCCAGCTTCCACCAGGACCACCCCAACAAAGCCCTCTGAGCCCGGACAATGAGGTCTTTTTTATGCTCAGGCTGTAAAAGCATTAAAGTGTGTAGTTTTTTTGTGGGTTGCAAAAGGACATAAGGTGGTCAGACTCCACCTATCACTCATTAAGTTACTCCAGTAGACAAACATTTCTCATGTGCACCTACTGTACATTTTGGCTTGATGATAAAGGTTGAAAAGcacacagtcttttttttttctttttttttttgcccattccCAACCTACTCCCAACCCTAAATAATGAGCTGATAGGGGATGAGATGCTAAGCTTTAAACTTCAAATTGGATGCAACGGTTTGCTAGTTTGTACTATTTGtaaatgtgcatgcatgtgttgagaaaaaaaaagccaaaggtGGAAAGCCAGAGgatgtgtattaaaatataaaagattgcATATAGAAATTATAACGAACAATCTAAAAATTAGATTATGCCTGTGGCATTTGTTGTACtgtaaattttagtttttttttgttgttgttgtttgtttttaagacgCAGCTTATTGCAGCAATAGATAAAAATGTAAGCACTACTGATTCACCACAATGATTCCCTGAATTCAGATGTTTATTAGGCTGCTGccaaaatacaaatgcatttgtttgtgttgttaATGGTATGAGAACAAATTTTGTAACCAAGCATGGGATGTATTTGTCACAATAATTTATTGTCCcttgaaactatttttaaaatagttttagatgTAGTAATATTAATGACTGCTATGTTCTGTTGTTTTGGTTTATAATATAGTATGTTCTTTAGTTGAATTATTTACTAATGAAGTGTAGCtttaaaatttattacattttcattcatataaaaaattgcatatCTTCACTTTATGTACAGTAGTTTACCTTTTGAAATTTTATTGTATGTcacttgattttaatatttctccTATGGTCAAAGatgttatgatttaaaaatgtacagtctATTTGAGTCTAGATAAGCAGTTATGTAGATGTTATTCAATGTCATTGTCCTAAGTACACTAATaccttttatttactttttttaagaatgctACTCAGTAACAgagaaataaaatttttaccAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98180 lncRNA upstream 47863 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 49151 23432809 ~ 23433745 (+) True G66350
TU98171 lncRNA upstream 77584 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 243084 23231564 ~ 23239812 (+) True LOC122350913
TU98273 lncRNA downstream 31839 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 37550 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 93057 23676434 ~ 23681832 (+) True LOC122350145
XM_043247716.1 mRNA upstream 26113 23447191 ~ 23456783 (+) True mthfr
XM_043246265.1 mRNA upstream 51970 23428915 ~ 23430926 (+) True nppa
XM_043246370.1 mRNA upstream 55692 23425908 ~ 23427204 (+) True nppb
XM_043247581.1 mRNA upstream 59234 23422672 ~ 23423662 (+) True nppal
XM_043247710.1 mRNA upstream 72335 23403713 ~ 23410561 (+) True LOC122350936
XM_043246659.1 mRNA downstream 3152 23586529 ~ 23597131 (+) True si:ch211-251b21.1
XM_043246660.1 mRNA downstream 3158 23586535 ~ 23597131 (+) False si:ch211-251b21.1
XM_043247315.1 mRNA downstream 15351 23598728 ~ 23612503 (+) True dpp9
XM_043247316.1 mRNA downstream 15351 23598728 ~ 23612503 (+) False dpp9
XM_043247317.1 mRNA downstream 18560 23601937 ~ 23612503 (+) False dpp9
TU98168 other upstream 330949 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 497312 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1362100 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1365062 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1518338 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 49006 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 169191 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 170084 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 170084 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 172314 23755691 ~ 23783631 (+) False acot7

Expression Profile