RNA id: XM_043246660.1


Basic Information

Item Value
RNA id XM_043246660.1
length 2179
RNA type mRNA
GC content 0.43
exon number 10
gene id si:ch211-251b21.1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23586529 ~ 23597131 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCATTGAGCAATAATAAGGGGGTGACTACAGTTTAGGGTTATTGGCAGGAAAAATGACTCCATTAGGACTCATCTTGGTTTCATCAGCACTGCTGGCTGGGCTCTGCGCTGCAGgacCACAGGTATTAAGAGTTACAACCATCAAGGAGGAACCGTACGCAATGTCCAAAGGCTCTGAACTGGAGGGTTTCTGCATTGACCTGCTGTCAGCTGTCTCAAAGAAATTAGATTTTAAGTATGATCTTAAGCTCGTAAAGGACGGCCGGTATGGCATAACGGATGACAGTGGCAACTGGAACGGCATGATCGGAGAAGTTGTAAGAGGGGAAGCAGACATTGCAGTGGCGCCTCTAACTCTAACAGCTAAACGTGAGCTGGTCGTGGACATGACCAAACCCTTCATGCAGACTGGTCTTAGTTTCATCCTGAGGAAAGACTTGGCTTCTGATGAATCGCAGTTCCTCAGCCTTCTCAACCTGTTCTCCACTGAGATGTGGATGGGTGTGCTGGTCGCCTACCTGCTGACCTCCGTCTGCATCTTCTTAGTGTCACGgattaGCCCCTGTGAGTGGGAGCAACcagaaaaggaaaagaattTCTTCACGCTCTCACACAGTTTTTGGTATACCGTGGGAGCAATGACTCTTCAAGGTGCTGGTCCTCATCCCAAGGCTCTTTCGGGACGGGTCATTACCTCTATCTGGTGGCTGTTTTCACTAGTGCTGCTTGCATGTTACTTCGCCAACCTTAGTTTATGGCTGCATTCAGACAACCAGCAAATGTCTATCAAGAGCTTTGAAGACCTCGCTAATCAAAACTTGATTGAGTACGGCACCATAAAAGATTCTTCCTCCTTTGCCTTCTTCAAGAACTCAAACAACCCCACATACCACAGGATCTATGAGCACATCAAGAAAGCCCAGAGCTATTCGCTCAATGCAGAAGAAGGTTTCCGCCGGGCTCAGAAAGGCAACTATGCATTCATCGGTGAATCTGTGTCCCTCGACCTGGCAGTGGCGAGACACTGTAACCTCACACGTGCTCCAGAAATCATCGGCATGAGGGGATACAGCATCGCCGCACCTTTAGGCTCTCCTTTGGTGAAAAACCTAAGTGTTGCCATTCTGCGTCTGAGCGAGTCTGGTGAGCTGGATTATTTCCGCAGTAAGTGGTGGGCTAGCAGCTGTGTGGCAAAAAATGGCAAGAGTGCTCCACTGAAGCCCACCAGTCTGAAGGGAATCTTCTTATTACTGGCACTCGGTCTGGGACTGGGGCTTTTCCTGGCTCTGATGGAACTGGCCGCCAAATCACGCAAAACCGCTAACACTCAGCAGAAATCCTGCTGCTCTGTCATGTCTGCTGAACTCAGTCAGCGCTTCAAAGGTGGAGAGGCGATGACACCAGAGTCCTCTGAAAAAAGCAAAGcctaaaaaaaagcactgacacacatgcatttaatcACTTAATGTTTATTACATCCACAACAAGTTACTCACTGCTAACCATACTGGGTGGGTGAAACTCATGAAAGAATTTCATTTGTTGTGCACACTTCAAAAATTCTATATTGATTGAAGAAAATTAAGCTAAATACGAGGgcgattatttaaaaaaaaaataatttgagaaCATTATAATTtcttatgtcatttatttctgggTGTAATATGACCCACGTTTCATGAGATTCAACCAGCATTTTATCTATCTAGACAACATGTGGctctattaattttattaaacatgtctaaaaattagttttatttagaaaaggAATTCCTCATTAATAATATAGCGTGTTATATTCTTTCATTACAAGTTCAGTTGCAGTACATACCTATAGGGTAAATTCCCCAGAAGTTTGAGAACACCCAAAAGTCTGACCAAACATATTCGTACTTATATCTAACTCATTAAAATCCGTCCTATACTGTTataaatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgccatgaagagtaaaactaaaaatggcATGAGAATATTGCATACACATTTGATCgaacatttatttctattaaaataaaatgatgcatgcaaaatatatacaggTACCCAGAAAATATTCTATTTCTTATTGTATGTGTCATTGCTTTAGGCTCGGTGAATTttcttaacaaaaataaaaatctgaaatatgctgtttgcatatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98180 lncRNA upstream 151502 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 152790 23432809 ~ 23433745 (+) True G66350
TU98171 lncRNA upstream 181223 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 346723 23231564 ~ 23239812 (+) True LOC122350913
TU98273 lncRNA downstream 18085 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 23796 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 79303 23676434 ~ 23681832 (+) True LOC122350145
XM_043246655.1 mRNA upstream 3158 23482896 ~ 23583377 (+) False plch2a
XM_043246657.1 mRNA upstream 3158 23507491 ~ 23583377 (+) False plch2a
XM_043246656.1 mRNA upstream 3158 23535653 ~ 23583377 (+) True plch2a
XM_043246658.1 mRNA upstream 7073 23482895 ~ 23579462 (+) False plch2a
XM_043247716.1 mRNA upstream 129752 23447191 ~ 23456783 (+) True mthfr
XM_043247315.1 mRNA downstream 1597 23598728 ~ 23612503 (+) True dpp9
XM_043247316.1 mRNA downstream 1597 23598728 ~ 23612503 (+) False dpp9
XM_043247317.1 mRNA downstream 4806 23601937 ~ 23612503 (+) False dpp9
XM_043246995.1 mRNA downstream 35219 23632350 ~ 23634056 (+) True ndufa7
XM_043247538.1 mRNA downstream 38018 23635149 ~ 23656851 (+) True ppih
TU98168 other upstream 434588 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 600951 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1465739 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1468701 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1621977 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 35252 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 155437 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 156330 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 156330 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 158560 23755691 ~ 23783631 (+) False acot7

Expression Profile