RNA id: XM_043246672.1


Basic Information

Item Value
RNA id XM_043246672.1
length 2095
RNA type mRNA
GC content 0.47
exon number 19
gene id pola2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8652304 ~ 8657286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATCAGCTCCCTCTGGCGTTCTGGGGGACGCGTGGCGGAACCGGAAGTGACCTTTCAGTGCTGTTTTGCGGGTTCTTTTTCGCGGCAATCCGAACGCGATGCAAAGACTGAGGAATATGACagctgatttttatttcaaaatataagATTCTTCGTGTTTAAACATCAGTGGACACAATAACAATGGCATCAGTCACTGCAGAGGACATCAAATCTGAACTGGACACTTTCTACATCGCCTTCAACGATGACACAGTGGATAAAATGTTGGAACAGTGTTTGTGCCACAGGCTGAAGGGGGAAGAGATTGTGTGTGAGTGGTTTGCTTTCAGCTCCAGTAGAGGCCAGCTACCTCTCACTCTTGATAATCTGGACCAGTTTGAACATGAAatactgaagaagaaaaagcctAAAGGCTCATCAAAGGGAAGCCAGTTTAACAAGACAAGAGACATAAACTCTATCCAGGAGCTAATCCGagcagaagaggaagaggagagctTGTTAGACTCCTATTCAACACCTGCCAAAGGCTCTCAGAAGCGAGCGCTGACCACCCCAGAACATCCTCAGTCCAAGAGAGGTGTGGCTCGACTCACCAGTCCCAGTCTGTTGCTGTCACCTGCCAGCTTCTCACCAAGtgCAACCCCTTCTCAAAAGTACGGCATGCGTGGTGGGCGAGGAGAGGTGGTTTCTTCGTTTGGGGCGGTGCAGGGTCCTCGCTGGACTGGTAAAGGACAGAGTGCTGTGAGGGTCGAGATGCTAGAAGGAGAGAATTCACTCATTAGCAGCTACAAATACATGTTCCAGAGACTGAGAGATGTGCGGGACGTTTTGACCGAAAAGATTGAAGAACTCGGAGAGGAACTGCGAAGTCATTTTAACATAGAGGAATTCTCTCCGGTTTCATTACCAGTTCAGGATAGCGTCACAGTACTGGGGCAAGTGTGCTGTGATAGTAATGGCAAGCTCAATGCCCAGTCTGTGCTGCTGGAGGCCGGACAGGAACAGGGGGGCAGACAGGTTCCTGTGGATCTGTCTGAGCTCAAAGAGTTCTCTCTTTTTCCTGGACAGGTTGTTGTGATGGAAGGTATGAATCCTTCTGGAGAGAAGTTTGTTGCTACCAAACTATACGAGGGTATTCCCCTGCCTTTTTACTGTCCTTCTGAAGTGAAACAAGAAATGGACGAGGtgtctgagtctgtgATGGTCATGATGGCTTGTGGACCGTTCACCCCCTCTGACAGTATGACCTATGACCCTCTGATTGACCTCATTACTATCATCAATAAAGATCGTCCTGATGTGTGCATTCTGTTTGGTCCTTTTGTCGATTCCAAACATGAGCAGATTGAGAAAAACCAGGTAACCGAAGCATTTGGAAACATCTTCAAAAGATGTGTGGACATCATAGTAGAAGGAACCAAAGGATCAGGATGCAGGTTAGTGTTTGTGCCATCTCAGAGGGATGCCcatcataattacatttatccTCAACCACCTTTCAACCTGACCAACCTCAGCAAAGATGATTCAGCGCGGGTGACCTTAGCTCCTGACCCCTGCACGCTCCTCATTGGTAATGTGACATTTGGCCTGACCTCTACAGACATTCTGTTTCATATGGGAGCCGAAGAGATCAGCAGtggCACAGGCACAGAACGTTTCTCACGGATCATGAAACACATGTTGACCCAGAGAAGCTACTATCCTCTCTATCCTCCTGCGGAGGAAGTCAACATGGATTATGACAGGTTTCAGCAGGTCTGCCAAATGAACCTCACACCTGATGTTCTTATTGTTCCTTCAGAGCTCCGGTATTTCATCAAGGATGTgattggctgtgtgtgtgtcaatccTGGTCGTCTCACTAAAGGACAGGTGGGCGGGACTTATGGAAGGATGCTCATTCAGCCAAACCCTGTGCTGATGGAGGGAAAGAGAATGAGTCCATGTATAGCAGGACAGGTGGTGAAAATATGATACAATTTACCTTTCCTCCTGCTAGAACTTTATTAAATCGtgtctgtattttttatgtctGTATTAAAACCTTTCACTTAAAGtgactggaaaataaaatactttatagaA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02321 POLA2; DNA polymerase alpha subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91990 lncRNA downstream 144181 8507891 ~ 8508123 (-) True G62120
TU91913 lncRNA downstream 222169 8427285 ~ 8430135 (-) True G62076
XR_006251686.1 lncRNA downstream 383087 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 383087 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 419530 8217019 ~ 8232774 (-) False LOC122350139
XR_006251637.1 lncRNA upstream 54751 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 54937 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 54937 8712223 ~ 8713432 (-) False LOC122350893
TU92189 lncRNA upstream 256196 8913482 ~ 8914004 (-) True G62239
TU92177 lncRNA upstream 261472 8918758 ~ 8920904 (-) True G62235
XM_043246677.1 mRNA downstream 2321 8647270 ~ 8649983 (-) False mrps36
XM_043247251.1 mRNA downstream 46138 8600995 ~ 8606166 (-) True rab3c
XM_043247026.1 mRNA downstream 171573 8478681 ~ 8480731 (-) True ndufaf2
XM_043246030.1 mRNA downstream 175757 8469042 ~ 8476547 (-) False depdc1a
XM_043246028.1 mRNA downstream 175757 8469042 ~ 8476547 (-) True depdc1a
XM_043246846.1 mRNA upstream 89601 8746887 ~ 8808599 (-) True skia
XM_043246733.1 mRNA upstream 163070 8820356 ~ 8911987 (-) True prkcz
XM_043246734.1 mRNA upstream 163070 8820356 ~ 8911982 (-) False prkcz
XM_043246731.1 mRNA upstream 163070 8820356 ~ 8909978 (-) False prkcz
XM_043246737.1 mRNA upstream 163070 8820356 ~ 8898036 (-) False prkcz
TU92042 other downstream 2339 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 2339 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 222530 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 222760 8429474 ~ 8429544 (-) True LOC122351131
XR_006251695.1 other downstream 222984 8429253 ~ 8429320 (-) True LOC122351132
XR_006251623.1 other upstream 600666 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1297464 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 1304511 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1731897 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1783478 10440764 ~ 10478685 (-) False G62826

Expression Profile