RNA id: XM_043246713.1


Basic Information

Item Value
RNA id XM_043246713.1
length 1085
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC122350330
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2943281 ~ 2947349 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTCAGGAAGCGACACCTCGCCGGCGTTTCCGCTGAAACCCCGATAAATGACCTTAATTTGAAGAAACGCTCGTTTAAATATCCGCAATTCGCTCAATTATTAATATAGATGGGCTTCTTTTGATCGAATGTTTAGTCGGGGAGGGATGTATGGCGAAAGCTGCTGGAATGTCGATTATGGAAATGAGCACCATGTCCACCAGTAATCTGCCACCCCTGCGTAACCTGCCCAGCTGGACCAGGGTTCGAGATCTGGACCGGGTGAGATACCCCAGACTTCTGTCCAGCGACTGCATGGTCAGATCACCACCCCTGGACATCAAGAGCCCGAAAGCGGCCGCCCAGCCCAGGACGGATGCGCACGGCGCACGCAGCGCATCTCTGGAGAAAGATATTCTGTTCCTCCAACAACAGCATAAAGACACATTGGAGAGGCTGCATGCAGAAATCGAAGATCTGAAGCGTGTTAATAAAGAATTACAGTATCAGCTGATtatggaaaatgaaaattctccaAAAGAGACCATATGGTCCGGCAGTAATTCTTCAAAATCCAGCAGCGATGGCTCAGCCGAGAAGAATTCCCAGAGTGGATTCATCAGCTCAGAGGAGGTGTccgagggaggaggaggaggaggtggtgcaGTCACGTCTCTGCTGCCTCTCAGGATCACCTGCAGCCCGTCCCAGCAGCCCCGGACCCCGACGCTGGACGAGTGCGAGCTCATCATCCGGCAGCTCTATCACGCCAACACCGCACAGTATCAGGAGCTGCTGCGGATCAAGACGGTCCTCAGAGAAATCACCTCCAAAAACAGATCAGCTGCTGAAGTTTTCTCACTTGCAAGAGCCTCGCTCTGCGACAACAGCAGGGGTGAAGTTTTTGAGCATTTTCCACCACTACCTCTCAGACCACTGCCAAAGAAACAGAACCCGAGTCACGCCGGTCAAAGAGAAAGCGTGCTTCTCCCGGCCATCAAACGCAATCTCAGCAGCACCATGTCAGAGCGGCAGAGGAGAGCCCAAGACGTGCACAGACTGCGTCTCAGGAGAGCGGTGAACTCTTAACCGTCCTTTGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89328 lncRNA upstream 309267 2632717 ~ 2634015 (+) False G60369
TU89329 lncRNA upstream 309267 2633145 ~ 2634015 (+) True G60369
TU89315 lncRNA upstream 331055 2610317 ~ 2612227 (+) True G60361
XR_006251673.1 lncRNA upstream 384234 2557030 ~ 2559048 (+) True LOC122351006
TU89440 lncRNA downstream 6052 2953016 ~ 2953994 (+) True G60452
XR_006251539.1 lncRNA downstream 51943 2998907 ~ 3000982 (+) True LOC122349907
TU89774 lncRNA downstream 108463 3055427 ~ 3056019 (+) True G60660
TU89775 lncRNA downstream 109335 3056299 ~ 3057846 (+) True G60661
TU89782 lncRNA downstream 129912 3076876 ~ 3080723 (+) True G60668
XM_043246715.1 mRNA upstream 77 2939263 ~ 2943205 (+) True tmem127
XM_043247470.1 mRNA upstream 9777 2930254 ~ 2933505 (+) True ufd1l
XM_043247733.1 mRNA upstream 29545 2912692 ~ 2913737 (+) True cldn5a
XM_043247196.1 mRNA upstream 116986 2824272 ~ 2826296 (+) True srrd
XM_043247826.1 mRNA upstream 130142 2804285 ~ 2813140 (+) True pptc7a
XM_043246714.1 mRNA downstream 2026 2948990 ~ 2952684 (+) True gatd3l
XM_043247559.1 mRNA downstream 68385 3015349 ~ 3033899 (+) True adra1aa
XM_043247953.1 mRNA downstream 550460 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA downstream 550460 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247890.1 mRNA downstream 608634 3555598 ~ 3568917 (+) True vsig8b
TU89218 other upstream 903446 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 907302 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 910219 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 925762 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1024911 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 901650 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 977897 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1101655 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2157606 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2157606 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile