RNA id: XM_043246714.1


Basic Information

Item Value
RNA id XM_043246714.1
length 942
RNA type mRNA
GC content 0.53
exon number 7
gene id gatd3l
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2948990 ~ 2952684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGCAGTGTGATCATGTTGGCATCACGAGTACACCTCGCCAAGCAGGCCGCAGCCATGCTGGTGCGCCAACCCGCCTGCCTGATGCATCATGGGGGAGACTGGGGCAACTGGGGCAACACCAACATTGCTGTGGTTTTCTCAGGCTGCGGTTGGTGGGATGGAACTGACATCCACGAGGCTGCGTACACCATGTACCACTTGAGCCGTAATGGAGCACGTTTTCAGATCTTTGCCCCAAACCAGCAGCAAATGCATGTCATGGACCACATGAGGATGCAGCCATCATCAAGTGACAACagGAACATGATGATGGAGTCTGCGCGATTCAGCCACGGCCAGGGCATGATGCAGATGAACGACCTGTCCAAACTGGACGTTAACAGCTTTGACGCCGTCATCTTCCCTGGAGGCCACGGAATAGTCAAGAACCTGTCCACCTTCAGCAAAGACGGCAAAGACTGCAAGCTGAATAATGACGTGGAGAGAATTATGAAGGACTTCCACCGCGCTCGCAAGCCCATTGGTCTGTCCAGCATGGCTCCTCTCCTGGCGTGCAGAGTTCTGCCCAATCTTGAAGTCACGATGGGCTACGAGCGGGACGAGAGCAGCCGCTGGGGTCGCTGGCCCAACACCAACATGGTGCAGGCGGTCAAGAGCATGGGGGCCCGTCACAACAACCGTGAACCTTACGAGGCCTATGTGGATGAGAAAAACAGGGTGATCAGCACTCCAACCTTCATGTGGGAGACTGACTATCACTACCATTACATCTTCGATGGCATCGGGAACATGGTCAAGCACGTCATGCGTATGACTGCCAAGTGATTCCCATGAGATGCAATCAAGACACCAGAAGGCTTTCACACTTAACTTTAGGTTGACCTGAATCCGCTATTATGTGGACATACAGAGAGTAATAAAGAAAACCATACAGTGCAA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89328 lncRNA upstream 314975 2632717 ~ 2634015 (+) False G60369
TU89329 lncRNA upstream 314975 2633145 ~ 2634015 (+) True G60369
TU89315 lncRNA upstream 336763 2610317 ~ 2612227 (+) True G60361
XR_006251673.1 lncRNA upstream 389942 2557030 ~ 2559048 (+) True LOC122351006
TU89440 lncRNA downstream 332 2953016 ~ 2953994 (+) True G60452
XR_006251539.1 lncRNA downstream 46223 2998907 ~ 3000982 (+) True LOC122349907
TU89774 lncRNA downstream 102743 3055427 ~ 3056019 (+) True G60660
TU89775 lncRNA downstream 103615 3056299 ~ 3057846 (+) True G60661
TU89782 lncRNA downstream 124192 3076876 ~ 3080723 (+) True G60668
XM_043246712.1 mRNA upstream 1641 2943281 ~ 2947349 (+) True LOC122350330
XM_043246713.1 mRNA upstream 2026 2943282 ~ 2946964 (+) False LOC122350330
XM_043246715.1 mRNA upstream 5785 2939263 ~ 2943205 (+) True tmem127
XM_043247470.1 mRNA upstream 15485 2930254 ~ 2933505 (+) True ufd1l
XM_043247733.1 mRNA upstream 35253 2912692 ~ 2913737 (+) True cldn5a
XM_043247559.1 mRNA downstream 62665 3015349 ~ 3033899 (+) True adra1aa
XM_043247953.1 mRNA downstream 544740 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA downstream 544740 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247890.1 mRNA downstream 602914 3555598 ~ 3568917 (+) True vsig8b
XM_043247345.1 mRNA downstream 622847 3575531 ~ 3576550 (+) True LOC122350663
TU89218 other upstream 909154 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 913010 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 915927 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 931470 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1030619 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 895930 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 972177 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1095935 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2151886 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2151886 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile