RNA id: XM_043246768.1


Basic Information

Item Value
RNA id XM_043246768.1
length 4171
RNA type mRNA
GC content 0.46
exon number 19
gene id dennd2c
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5390825 ~ 5410171 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAAAATACTGCCAAAGCATTTCAGTCGAAAGCAGTTCCAGCATATGTTTCCCGCCAAAgagcaataaaatcaaaacaataaagtaGCTTTCTACCGAATCAGTTCCCATGAACACACATGGCCGGTTTCATTGCAGCAGCAGTTTGTGAGCTGATTCATCCAGTCAGAGGAACCGAAGCTCAGATGGGGAACTGACAGCACAGGAGGAGGACTTACACGAACACATCCACTGCTCAAGGAACGCCGAGAACGTTTTCTGTCGGGAATACAAACAACACCGGGAGTTACATTGTTGCCGGTTGCCGGGAATTAGTTGTTCCTTTGAACCGAGTCGGTTACTCGCCGTGAAAGTGAATGGAGACaaagttttttagttttttttttttttttttccccgagCAAGTTTTTAGCCGCCTGGCTAACCCCAGCCGCGAGATATGAAGACTTCGGGTCCACAACAGATGTGTAGACTCCGTATTTACTCCAAGTGAACTCTTACGAGAGCTTTTATTTCGGTTTACTTCAGCGGAATCGGTGTTGTGAAACCGCGAGCTAGTTTGCGTAAGCTTCAAAGTGAAGGAAGAATGGCAAAGGAACTGACTCCTACAGGAAAAGGGTTCTTTGGTGATCTTTACTAACTTCCATTGCACCACAAAGGAAGGGTTTCTTCCTTGATAGGCTCGCTGTTGCAATGCCACACAGTCCTGCAGTGTGACGGCAGCCTCGTCGTCATGCTGGCCCTCGGACTGGATCATGGAAAAAGAGGGGGGAACGGCGTCGCAGGGAAGACGGCGACAGCGACAGCAGCGTGGCCGATCACACGAGAGCCTGGCGTCAACATCAAGCAGAAAATCTCCCAGTGGGAGGGTCTCAGCCAGCAGGAGGATGTTCGGAGTGGGAGTATTAAGCCCGAGCGGACTCTTGCATCTCGCAGGCTTTCAGGGGACCTCCTTGGAAATGGACTTGACAACAGTGATGGAGGTCGCAACAAAGCGACTGTATCAAAAACCAAAAGCTTGGGTTTGGATTTCAGGGAAAACCAGATGACTTTTAGACCAGTTACAGGTGATCTCCAGTCTGGTTTCCCAAGAAATCTAactcatttgaataaattagCAACATCAACTCCTAAGCCTTTAAGCACTGTAACCCAAGTGGCTAAGCTGAATGTTAAAAGCAATAATATCAAGACAAACCATTTCACAGATGTCGAAATTACATCTCTACCTCAGTGTGTAGATGATCCAGAGGCGTCATTGCCTCCGGGGAACTTTTACACCTCCAGGGGTTTCTGGAAACGACTTGAGGCAGATGACTCTTTCTGGGAGAAGGAGAAGGATTCCTCAGTGGTGACTAAGGGTCTTGGTGAAATCGGACCTTCTTCTCCTCCACCTAAACCACAGCGCACATTCCAGTACAAGGGTGCGAGCAGTCCGCCCGGCCAATGGATCCAACTGGAGAACCAGACTCCATCAGTCAGCAAATCCAGTCAAGTCCAGAAGCATGACATCATACTAAAGCCACCCAGCTGTCCGCCTCCTCCGTGTCCAGTCAACACTATCAACGGGTTTTccagaaacagaaagaacagGAAGTCGTTTGAGTTTGAGGATGCGGTACGGCGGACAACCCAACAGGCCTCTAGAGGGAAGGAGGGCCGCCGATCAGGTCTTTACCACGCCCGGTCTGAAGACAGCATCTATGAGGACATCATCTCGGAAAAAGAGAACCCATATGAAGACATCAAGCTTTCTCCTATGTGTTTACCTATAAGACGGCCACGAAACTACACAattggacagagagagagcccACATATCAAGCTCTCACCGAAGCCCTTCACACTGTTACCTAACGGCGACAGGCTGTATAAAATGGGGCCGGAACGTAAAGAATCCATAACGTCACCTACACGTACCTGTACTTCAAACACTCCTAAATCATCAGCAGCCAAACCTGCTACTACATACAGGACAATCCGACAACCCCCGCTTGTAAACAGGATCCAGGAGATATTTGAAGCCAAAAGAGGAAGGAAACGCATATGGGCAACAGCATCCAGAGATGATTTAAGTGGAACAGAGAGTGATCCTGAGGAGAGCTCTAAAGATCGCTCCCAGCGAACCGTGTATGTTCAGTCAACTTTAAAGCGACGGCCAGGTTACCGCACTTTAGAGAGGGACCTGATCCAACTACAAGAGCAGCAGCTTTTCCAGCAGTTTGTAGTGGTGTCACTTAGAAAAGCTTCTCCTGGAAACACATACATCCCAGAGATCACACAACAGTTCCCTACAAAGtttgaAAAGTCTTCTCGTCTGTCTCGTGAGGCTGAAGACCGATTAAGAGCCATTCCCAAGTTTTGTTTTCCTGACTGTCATGACTGGCGTCCCTCCTCAGACCACAACAGtgaaacattttcttttgtccTAACGGGAGAAGACGGGAGTCGCTTATTTGGATACTGCCGTAAAATCCTGCCCAGTGGGAAGGGGAAGAGACTGCCTGAAGTTCACTGTATCGTCAGCAGACTGGGCTGCTTCAATCTCTTCTCGAAGATCCTGGAGGAagtggagaggaggagagagattTCTCCTGCCTTGGTTCATCCTTTCATGCACAGTGTGATGGAAGCTCCTTTTCCCGCTCCTGGACGCACCATCACCGTCAAGAGCTTTCTGCCGGGCTCCGGCAATGAGgttctGACTCTGTGCAGGCCGGTGGACTCTCGTTTGGAGCACGTGGACTTTGAGAGTTTGCTGCAGTGTCTCAGTGTGACCAGACTCTTGCAGGTCTTCGCTTCTCTGCTGCTGGAGAGGAGAGTTATCTTCATTGCGGACAAACTCAGTGTCTTATCCCGATGTGCCCATTCTGCCTTGGCTTTGCTGTATCCCTTCACGTGGCAGCACACGTTCGTCCCGGTGCTTCCTGCCAGCATGCTTGACATATGCTGCTCTCCTACGCCTTTTGTGATGGGGGCTCTATCTCCGTCCTTGCCTGAAGTGATGGATATGCCCATTGAGGAGGTTCTTATTGTGGATTTGTGTGCGGACAAGTTTGTTGTTCAGCTTGGAGACGAGGACTGTATCTTACCTAGAAAGCTGCAGGCAGCACTTCAGGAGATACTGGAGACCAGGGAGGAAATCCTTGAACAAAGCACAAGAGACAGGAAAGGAGATAAATCAGACCTGAATGCTCTGGTGTCAGAggcgtttgtgtgtttttttgttgagcTGGTGGGACATTATTCTCTGTACATGAGCGACTCAGGACCCAGTGGCACCCGAGAGCTGCAGAGAGATGCTTTCAGAAAATCTCATCCGTCCCGAGGAGTGCGGCAGTTTCTCCAGCTCTTCATGGACACGCAAATGTTTGCTGGTTTCATTCACGACAGAGAGCTCAGAAAAGGAGGCGTTAAAGGGCTGTTTGAAATGAGAGCGGCGGATTATTTGGATTCTTATCCTGAACCTGAACCAAGTGGAGTCAACAAATTTCTTAAGGGGCTCGgaaataaaatgaaattcttGCAGAAGAAATAGACAACTATACTGGACAGTTTTTCAAAAAAGTGTATGATGACTCAACCAACATGTCCTGTATCCAGCGTTGAAGGGTAGAGATTAAGTCAAGACTGGAATCAGCTTGTCTGCTCTCAGAATTCACCCGTCGCGAAAGAGGAAAAGGCTGGAAATGAGTTTATAAGCACAACTAACAAAGAGGACTGAATTAGAACCAAGAGGAAAGGGAATAGTTTGTGTCATGGTATTGTAATTTTGATAGATAAGGAAAAATCTGACTATGAATGCATAAGAACAAGAGTTGGGTTAATGTCAGtggtcaatgtttttattgtctttaatgtattttttattaaatcggACAATAAGGTAAGCTCATGTtttaaccaaaaacattttccaactggaaatttgttgtttaaaagaaaacacgATGAAGGATGATTTCTATTCCCCTTCAGGAATTAATTTATGGTTCTTCATATGCACAGACATGGCCTTTCCAgctaaatgtcaaacatttattttcagcccaattttctgttttgtgaaatatcagtgtaaatgttacagttttacattttgtacagttttgGTTTTTAGACGAACTAGTTTTTCTTTGTAACGTTCGAAAATAAAACAACGTGTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90994 lncRNA downstream 24477 5323112 ~ 5366348 (-) False G61476
TU91004 lncRNA downstream 38368 5336987 ~ 5352457 (-) True G61478
TU90998 lncRNA downstream 50873 5323112 ~ 5339952 (-) True G61476
TU90965 lncRNA downstream 124787 5143199 ~ 5266038 (-) True G61459
TU90605 lncRNA downstream 385259 4961583 ~ 5005566 (-) True G61216
TU91050 lncRNA upstream 160233 5570404 ~ 5573893 (-) True G61502
TU91067 lncRNA upstream 172744 5582915 ~ 5584720 (-) True G61507
TU91041 lncRNA upstream 197516 5607687 ~ 5609427 (-) False c8h9orf116
TU91040 lncRNA upstream 197862 5608033 ~ 5609427 (-) False c8h9orf116
TU91083 lncRNA upstream 204158 5614329 ~ 5617664 (-) False G61513
XM_043246129.1 mRNA downstream 705 5385707 ~ 5390120 (-) True bcas2
XM_043247338.1 mRNA downstream 6406 5362726 ~ 5384419 (-) False trim33
XM_043247336.1 mRNA downstream 6407 5362726 ~ 5384418 (-) True trim33
XM_043247863.1 mRNA downstream 28840 5353619 ~ 5361985 (-) True slc66a1
XM_043247303.1 mRNA downstream 39553 5341394 ~ 5351272 (-) True nr1h5
XM_043246774.1 mRNA upstream 780 5410951 ~ 5423401 (-) True ampd1
XM_043246773.1 mRNA upstream 780 5410951 ~ 5423387 (-) False ampd1
XM_043246772.1 mRNA upstream 780 5410951 ~ 5423386 (-) False ampd1
XM_043246775.1 mRNA upstream 780 5410951 ~ 5423380 (-) False ampd1
XM_043247541.1 mRNA upstream 13420 5423591 ~ 5431733 (-) True nras
XR_006251611.1 other downstream 39549 5341733 ~ 5351276 (-) False nr1h5
TU90970 other downstream 183303 5202498 ~ 5207522 (-) False LOC122349940
TU90968 other downstream 192936 5196611 ~ 5197889 (-) False LOC122349940
TU90966 other downstream 202909 5187315 ~ 5187916 (-) False LOC122350811
TU90417 other downstream 993751 4393213 ~ 4397074 (-) True G61071
XR_006251650.1 other upstream 66042 5476213 ~ 5510943 (-) False pip5k1bb
XR_006251542.1 other upstream 195391 5605562 ~ 5609570 (-) False c8h9orf116
TU91084 other upstream 204158 5614329 ~ 5617664 (-) True G61513
TU91112 other upstream 509790 5919961 ~ 5925347 (-) False LOC122350596
TU91179 other upstream 1020861 6431032 ~ 6442982 (-) False LOC122350671

Expression Profile