RNA id: XM_043246781.1


Basic Information

Item Value
RNA id XM_043246781.1
length 1590
RNA type mRNA
GC content 0.63
exon number 5
gene id ubox5
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 581029 ~ 586701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGGGTgagttttgttttgatcagCGTGATACCCAAACGTTATATGTCTTATTTACGCGCGTCTCGAGCCAAGCAACGCTTCCGGTCTGTCCGAGCGCTCGGCTGGTTTGATTGCTGTAGATGCGGTGGCCATGGCGCTCAACCTGTGCTCATCGCACTTCCAGACCTCCATTCAATGCGACAAGCTGTGCGCTGACGGTTACGACGTCTCCAACCTGCTCTCCGCCGATCCGGCCGCCCGCCGCAGGGGCTTCAAGCTTGAATACTTCCTCCGGGCTCCGTTCCACGTCACGCTGAGCTTCCGGGAGGAGGTGGATCTGTGCCGGCTGGACCTGGAGCTGTGGCCGTGGGGGATGGATCAGGGGAGGAGCTCGCGGCGGCTGGAGATCCTGACGTGTCCGGAGCGGGACGGCCGCCGCTTCGACCTCGCGACCCGCTGCGATCTGCGCGACGAGCTGCGGCTGTGTTTCCGTAACCCCGCGTTCCGAGCTCGGGCGCCGTTTCGCGACGCTCCTCCGCAGGCGCCGGCCGGAGCGAAGACGCAGGAGCTTCGGAGACTCGGCTCGGTGGCTCGGCTCCGGGTGGGCGTTCCTTTCAGCGGGGCGGCGGCGGCGCTCGGCATCAAGTCGCTCGCCGTCTGGGCTTCGCCTTCTCGCCGCTGTAGCGCGTCCGAACTGGAAACCCTGCGGGAAGCGCATCTGAAAAGCGTGCAAAGCCCCAACCTCTTCGCCGCGTCGCCGGCGCCCCTCCCAAACCCGATACCGTCCGACACGCCAATCCCGGAGGAGTTCCTCGATCCCTTAACGCAAGAGCTCATGGTTTTCCCTGTGATCCTGCCTAGCGGGATGATAGTCGATAGCGGCACGCTAGAGGAGTACCAGAAGAGAGAAGCCACTTGGGGGCGTTCGCCCAACGACCCGTTCACCGGCGTCCCTTTCACCCAGAACTCGAAGCCTCTTCCAAACGCTCTCCTCAAGAGCCGCATCGACCGCCTGGCTCTGCGGACGGGATGCACGGGGGTCGGGGGAGACCGGGCCGGACCGCGGCCTTCCAGACTCACGCCGGAGGTTAGACTCCTCCCAGGCTCCGGCTGCGATCGGACGGACGGATCACGAGCGCCCGGCTCGGACTCTAAAGCGACAGCAGGTTCCCGAGAAAACCAGAGCCGCTCTGCTAAAAGGAAGCACGAGTCCGGTCTTCCCTCCAGCGCCGCTGAACCCGATCGCTCGGTTTCGAAGAGGGCGTGCGAAGCTCCCTCAGAGCCGGACTCACACGAGCGGCGGTTAGCGGACAGCTTGGATCAGGCTCTGAACGCGGCCCTCCGCGGCTTACCGGCCTTCACTTCAGCGAGCGTCCAGCGCTCCTCCGGTCTTCAGGAGTGTGTGTTCTGCTCCCGTGGGCTGTCCGTGTTCTCCTCGAGCGCGTCTTACTCTCTGGTCTGCTCTCATCTGGTGTGTGGAGCGTGTCTGAGACGGCGTGAGATCAAATGCCCGGCGTGCGGCTCCTCGTCCTCCGGCAGAGACATCGCTCGAGTTCATCCCTGATTCTCTGTGGAACgtttattaaactttttctgaatgattcaaaa

Function

GO: NA

KEGG:

id description
K10600 UBOX5, UIP5; U-box domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88300 lncRNA downstream 29147 514767 ~ 551882 (-) True G59739
TU88322 lncRNA downstream 33118 545919 ~ 547911 (-) True G59750
TU88237 lncRNA downstream 344372 236074 ~ 236657 (-) True G59688
TU88239 lncRNA downstream 344372 236074 ~ 236657 (-) False G59688
TU88197 lncRNA downstream 497176 83574 ~ 83853 (-) True G59654
TU88788 lncRNA upstream 28645 615281 ~ 617472 (-) True G60016
TU88829 lncRNA upstream 73799 660435 ~ 661098 (-) True G60036
TU88765 lncRNA upstream 136554 723190 ~ 725000 (-) True G60003
TU88767 lncRNA upstream 138628 725264 ~ 727029 (-) False LOC122349987
TU88853 lncRNA upstream 146204 732840 ~ 734242 (-) False csgalnact1b
XM_043247522.1 mRNA downstream 4851 572583 ~ 576178 (-) True LOC122350794
XM_043247734.1 mRNA downstream 10062 568586 ~ 570967 (-) False ccl27a
XM_043247950.1 mRNA downstream 17815 558256 ~ 563214 (-) True slc35d2
XM_043247016.1 mRNA downstream 48655 362578 ~ 532374 (-) True fbxl17
XM_043246776.1 mRNA upstream 2162 588798 ~ 601844 (-) True lzts3b
XM_043246783.1 mRNA upstream 20814 607450 ~ 610914 (-) True sprb
XM_043247533.1 mRNA upstream 43718 630354 ~ 631145 (-) True fabp1b.1
XM_043246157.1 mRNA upstream 126730 713366 ~ 724970 (-) False rnf165b
XM_043246156.1 mRNA upstream 126730 713366 ~ 724970 (-) True rnf165b
TU88755 other downstream 10056 565886 ~ 570973 (-) True ccl27a
TU88852 other upstream 140553 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 548765 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 554062 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 765274 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 990169 1576805 ~ 1578744 (-) True G60220

Expression Profile