RNA id: XM_043246783.1


Basic Information

Item Value
RNA id XM_043246783.1
length 1761
RNA type mRNA
GC content 0.47
exon number 3
gene id sprb
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 607450 ~ 610914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcactataaaaatgttcatataaaaaaagtatcgtttaaataatttagggaaaaaaacgaaattgcaaaaattaaaataataaataataataaaataagtcaaTCGGTATATTCTCATGACTTCTGATGCTGAAAAGCACAGAAATAGATGACACTTTAGCAcgcattcacacagaaaacagcccTTTTAAGATTCTACAAATATTCCCGTTTTTTCTGTGACTTCAGAAAATCTTGATTCGTCCCATCGTCGCTCCAGGCCTTTTCTATCACGCAGAACTCATCGCGTTTTTGTGCATGATCCGTGCATGAAATGCATCGGTTCCTCTCGGGGCGCCTGGTTTTAAAGCGGAGCGCCCCGCTGAGACGCACCATTCTTCCGGAGGCATGGAAGACGGGATCTCTCCGGAGGCCAGGGATCTGGGCAGGGCTCTGTGCGTCGTCACCGGAGCGTCCAAAGGCTTCGGCCGGACGCTGGCCTTCCAGCTCAGCTGTCTCCTGAAGCCCCGGTCCGTCCTGATGCTGGTCGCTCGCAGCTCGGAGCAGCTCCAGCAGCTGAAGAAGGACATCGTAAACCTGCACGGACAGAGCGCGCTGGACGTCCGCTGCGTACGGGCCGACCTGGAGAAGAAGGAAGGCGTGGAAAAAACGGTTCAGGCTGCTAAAGAGACTTCGGTGTCAGAAATGGAGCACATACTCCTGATCAACAACGCAGCGTCTCTGGGCGACGTGTCTCGCTTCGCTCTGACCTTCACGGATCCACTCGAGGTCAACCGTTACCTGTCTCTGAACGTGAGCGGAGCTCTGTGTCTGACGGCCGGCGTCCTGCAGGCCTTCCCTCGGCGTCTGGGTCTCCGGCGCTCCGTGGTCAACATCAGCTCTCTGTGTGCGCTCAAACCCTTCCCGTCCTGGGTGCTGTACTGCTCCGGGAAAGCCGCCCGAGACATGATGTTCCGGGTGTTAGCCGAGGAGGAGCCGGACGTAAGAGTGCTCAGCTACGCACCCGGTCCTCTGGACACAGACATGCAGCTTCAGGCGAGGCGTTCCTCGGGAGATCTTCAGCTCAGACGCTCCTTCTCCTCCATGTTCTCCGAGGGTCAGCTGCTGTCCTGCGAGGAGTCCGGAGCCAAGCTCATGAAGCTCCTGCTGGACGACCGCTTCCGCTCCGGAGCGCACCTGGACTTCTACGAGCTCTGAGGCCCGCGAGCTCCCCCGCTGTACATACACCCCgcttaaaaatctataaatctgGTTAGAAATATGCTGCGTTTTTATAAAAGGAATAAACGAACGACTGTTCTGCCGGTCCGTGTCTTTCACTGATGAAGCAGCTGAGGACCTCTAGTGGAGatcacgcacaaacacacagagaaagactgaaatgtaaaaacagggtcagatttgatttaaaatgttttatgtagtaAATGAGAAGGgttctaattaatattcataatctGAGACAAAATCGATCAACAGTTAATCAACGGTTTTCAATAAGTGAGGATTTTGTAAAAGCATAGAATTaagttttgtgttgtttttggtgCTGATGTTTTTTGACGTGATACGAGCAGAttcagataataataaaaaaaaaaattatttgggggataataaattatgatatataacaggcataataaaaaaaagcattattaatgTAGAGAAGGAAAGAATTTAattagtattaaattaaatcaacaattcaataaaaaaaattatgctaacaccatgttaaaatattgtttattcatttac

Function

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004757 sepiapterin reductase activity molecular_function

KEGG:

id description
K00072 SPR; sepiapterin reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88300 lncRNA downstream 55568 514767 ~ 551882 (-) True G59739
TU88322 lncRNA downstream 59539 545919 ~ 547911 (-) True G59750
TU88237 lncRNA downstream 370793 236074 ~ 236657 (-) True G59688
TU88239 lncRNA downstream 370793 236074 ~ 236657 (-) False G59688
TU88197 lncRNA downstream 523597 83574 ~ 83853 (-) True G59654
TU88788 lncRNA upstream 4367 615281 ~ 617472 (-) True G60016
TU88829 lncRNA upstream 49521 660435 ~ 661098 (-) True G60036
TU88765 lncRNA upstream 112276 723190 ~ 725000 (-) True G60003
TU88767 lncRNA upstream 114350 725264 ~ 727029 (-) False LOC122349987
TU88853 lncRNA upstream 121926 732840 ~ 734242 (-) False csgalnact1b
XM_043246776.1 mRNA downstream 5606 588798 ~ 601844 (-) True lzts3b
XM_043246779.1 mRNA downstream 20749 581029 ~ 586701 (-) False ubox5
XM_043246782.1 mRNA downstream 20804 581029 ~ 586646 (-) False ubox5
XM_043246781.1 mRNA downstream 20814 581029 ~ 586636 (-) True ubox5
XM_043247522.1 mRNA downstream 31272 572583 ~ 576178 (-) True LOC122350794
XM_043247533.1 mRNA upstream 19440 630354 ~ 631145 (-) True fabp1b.1
XM_043246157.1 mRNA upstream 102452 713366 ~ 724970 (-) False rnf165b
XM_043246156.1 mRNA upstream 102452 713366 ~ 724970 (-) True rnf165b
XM_043246159.1 mRNA upstream 112231 723145 ~ 731844 (-) True LOC122349987
XM_043247330.1 mRNA upstream 121879 732793 ~ 739372 (-) True csgalnact1b
TU88755 other downstream 36477 565886 ~ 570973 (-) True ccl27a
TU88852 other upstream 116275 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 524487 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 529784 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 740996 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 965891 1576805 ~ 1578744 (-) True G60220

Expression Profile