RNA id: XM_043246853.1


Basic Information

Item Value
RNA id XM_043246853.1
length 3071
RNA type mRNA
GC content 0.44
exon number 8
gene id enkd1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2006084 ~ 2014684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCcggacacacacgcacgcgctaAAAATAGATTCACCGCGGCTCCAGTGACAAAATGAACACTTCCACGCCGGCGTGCATCCACATGTAGCTTCATTCCTGAGAAATGCACACTTAACACATCCACGTACAATGACGCATGCATGAGACGATGGCTCggtcttccaaaaaaaaaacgttttactCTAGATCGCGTGACCAGCCTCCACTTTGCCACGTTTAAAAGCCTATATAAAAACCGACCCGCAATCCATCGCCATTTACTGAAATGCAGTCTGGTGCCAGACACTCATCAGTCACAAACAAATCATTGTGCTTTAGCGAACGTCTTCAGACACGAGGGCCATTAGAGAGTCCGTCTTGTGGGAAATCTCAAAGACATCTGTGGTAAGAGCTTACTGCCTTTACAATGCGACCTTATCATGACTACACagtgtacttttaaaataaaaactgcgtTAATTATCATATGactaaaaagttttatatttgcttttagCTGAAATCATCCGACCACAACAATATGGATATTTGTGCTATgaatagtataataaaaataacaataaatgatatGCATTGCTCACTTGAGAAGTGTAACAACGCATGAAATAAGTTACTTTTATCACTGTTTTTTGCTCTGTACTGAATGTAACAGGGTTGATGGACGTTTTGCTCTGGAGACCCACCAGATGGTgccatttattagtaaaatCTGATGAAGCGGAAAGGTGCAAAAATATCATCAATCAGCTTTTCTATAATTCTGTAATAAgcctacatacatacataatacactGTTATACACCACAGCGTGTGATATGCAATGGCATCATGTCTCTTTAAGGCTGTGAAACACGTGCTGAATGACAAAGACAAGCTCAGGTGTAGCTCCGCATTCAGTtccagcttgttttttttcaaaccaaaGAAGAAACCAATTAGCTAATGGTTCATTAAGAAGCGGTGGTTTTCATCACAGTCAACTAAAATCATTTCAGTCCAATTATAACGACTGGTTATTGATACTACGTATTTGTGATAGCGTGACCAGCACCtaacaaaatgtgtttataacGTACAGGAAAACAACGAGAGGTCACGGAACAATGGGAGACGTCACAATGGGCTCCGTATGTGGCGAATGTAGCAATTAATAGACACATTCAGCATCAGTATGTGTGAAGGGCCCTCAGCGATCTCTGGTCCCATTCCTCCAGACCCCACACTGTTTCCTGAGTATTACAAACGGCCGTCCTCTGCGTGCGGTCGTCTGGAGGGAAACGCTCCGCTTCTGAAGGGCCCGTTAGCTCCGGACCCCGGGTGTTGCAGCGCCCGCTCCAGCCCTCGGCCGCGCATCGGAGCCAACGCCGCTCACATCCtggagagaggacagagagggGTTGTGGGAGAGCTGCTGAAGCTGGAGGGAGTGGCGCTGAACCCAAGCCCGGCCAAACCTAAACCTGCCATACGGGACTTTGGTAAAGAAAATGTGCGCAAGCTTCGTGAAGTCCAGAAGCGCTTTCGAGAGCTGGAGGCGCAGAGAGAACACGCCAAACCCATGCCAGTGAAAGCACTCTGGATCTCTCCAAAATACCAGGACGTCCCCTCCAGGGTAATGGCCCAGTTACAGGAGACGAGCCCTCTCAAGAAACCCGAATGTCAGAACTTCCTGAAGGCTCATTCTCTTTGTGGAGCCGGAGGTCGTCCCCCGCTCCGTCGCTCCGAGAGCGGCCCGTCGCCGCCGGCAGGGGACTCCGATTCTGAGATGCTCGTGAGAGGACGCACGGTGGACTTCGTGAGCCACAACGCTCGCGCCGCGGCGAAGACCAACCTGAGGAGATCCCAGTCCTTACAGAACCTCGGAGACAAGCCGCCCCCCAGCGCCGAGAAGGGCAAAGTACCGCAATATCTGGAGCAGAGGAAGTTGCAGTggaagaaagaggaagaggagagaagaagaaacacCCCCGATCCGTCCGTTCCTGCTGGACACACTCAGATgtctgaaagagagagacaggagaccCTGCAGTCCCTCAAAGAAActcacAGGTCTCTGGTCAGTGAGCTGCTGTCTCTCCCCGTCAAAGTCGACACAGTGAGCGTCCGCTCTCGCCGCGCTCAGCTCGATCAGCGTCTCTCGGAGGTCGAGGAGGCCATCAAAATCTTCTCGCGGGAGAAAGTCTACGTGAAAGCCGACTCTTGAGAAAGCGCActcatataattttatatgtatgtatttatcaGTTAGCAGCAGCTGCTCGTCTGTGTCCTGACTGCTCTTACGCTTGACACTATAAAGAGATTTGTGgctaaatatgcatattactGGCAGAAATTGATTTCCTTTTTGCTTATCCTATTCTGTATCCATGCTTTGGTTCGATTATTATGAGATTAAATAGCTATAATTATCAAAAAGGCATAATTATGAGAtgaaatgtcaaatattatgagcaaaacatctttaaatatgacattttgtttaaaattctgATTGTTTGTCAAAGGTTTCATTCTCAAAATTATGATTTAGTGTGTAATAATATTgactttatctcataattacatatttatctcATAAGTgacttttatctcacaattatgtCTTAGAcagctttgattttattttgcaatcaTGAAGTTGTCGTAATTTTAAATTACCAAAGCATTATATAGCAGAAATGGGTTTCCATAGTATTTGGTGCATTTGTTTATAAGTTCAGAACTGtctgtatattattaaatattctatGTAATCAAACATATTTCTGCTGCCATGAACAGTAACAACTGTTGAATGTCTACTATGGCAAGGTGCTGATCGCAATGCTGTCATTTAATGTTATGATATGATGTGtcattgaaattaattttagtattaCTAAAAAGTGGTGCTTTTACACGCTATACAACAaaactcaaaactcaaaaacacacagtgtttatttaatcatGTTAATTAAGTTTCAAAAAGTACCCCAAAACACCTAAAATCTGAATGCCATTGCTTTATTACAagtaaaaacagttttgctttttGATCATTTCAACTGGTGTGGCGGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89197 lncRNA upstream 3081 2000761 ~ 2003003 (+) True G60288
TU89188 lncRNA upstream 6616 1967120 ~ 1999468 (+) False G60281
TU89187 lncRNA upstream 6616 1979786 ~ 1999468 (+) True G60281
TU89189 lncRNA upstream 6616 1996448 ~ 1999468 (+) False G60281
TU89166 lncRNA upstream 52958 1952793 ~ 1953126 (+) True G60269
TU89213 lncRNA downstream 3713 2018397 ~ 2020034 (+) False polb
XR_006251573.1 lncRNA downstream 9878 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA downstream 10128 2024812 ~ 2027258 (+) False LOC122350140
TU89180 lncRNA downstream 26818 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 26818 2041502 ~ 2044650 (+) False G60279
XM_043247683.1 mRNA upstream 10225 1966583 ~ 1995859 (+) False ikbkb
XM_043247684.1 mRNA upstream 10225 1967657 ~ 1995859 (+) True ikbkb
XM_043247051.1 mRNA upstream 59135 1936761 ~ 1946949 (+) False LOC122350512
XM_043247050.1 mRNA upstream 59135 1941657 ~ 1946949 (+) False LOC122350512
XM_043247049.1 mRNA upstream 59135 1941658 ~ 1946949 (+) True LOC122350512
XM_043246854.1 mRNA downstream 175 2014859 ~ 2020034 (+) True polb
XM_043246237.1 mRNA downstream 16140 2030824 ~ 2034372 (+) False LOC122350053
XM_043247450.1 mRNA downstream 23015 2037699 ~ 2039825 (+) True LOC122350758
XM_043247567.1 mRNA downstream 40647 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 40648 2055332 ~ 2058725 (+) True mrpl40
TU89150 other upstream 87713 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1154080 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1201245 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1466018 537794 ~ 540066 (+) False cdc14b
TU89212 other downstream 196 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 16194 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 19208 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 23068 2037752 ~ 2039836 (+) False LOC122350758
TU89939 other downstream 1833930 3848614 ~ 3850557 (+) True G60788

Expression Profile