RNA id: XM_043246858.1


Basic Information

Item Value
RNA id XM_043246858.1
length 2292
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC122350417
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20931950 ~ 20943305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aggtgGCAAACAAGAAACCTCTTGCTCTCAGTTTTCATCCTCATTTAAGGAGCTGCAGCAGTGATAGAAGAATTACagacacactcattcacacagcTTCTGAACGCATCccttcttcatcatcttcatcatcatcactgctTCTTCTAGAAAAAGAGctTTGATGCAAGTCCTGTGAGGATGTTTATCATGGCCTACATTCCCTTTGAATGAAAGGCAGCCGTCTGGGGAGCTGAAGTGTTTCCATGACATTACAGCATCACTGCCTCCTGTAAGAGAACGAGGACGGGCCTTTCAAAACTCACAGAGATGGCTGAGGTGGAGCAGCTCTCCACTCCCCGCGACATCGAGATCAGCGACGTGAGCTGCGACTCTTTCCGGATCCGGTGGGACATGGCCCTCGAGGACGCGTCTCGGCTGACGCATTACTTCATCGACCTGAGCCGCAAACAGGGCGGCGAGCAGAACCGCTTCAAGCACAGGgacgTCCCCACCAAGCTGGTGGCAAAAGCAGGACCTCTGCCGATGGCTGTGAGGGGCCACTGGTTCCTGAGTCCTCGAACAGAGTACTGCGTGGCTGTCCAGACCGCCATCAGACAGCCGGACGGAGACTATCAGGTGTCTGAATGGAGCCAGGTAGTGGAGTTCTGCACTGGAGATTACGCCATGGAGCATCTCCAGCAGCTGTTGGATAAAGCTCAGGCCGCCGCTGGGAGGCTGCTCAGGTTCTCCGTCTTCTACCGCAATCAGAGTCCTGAGTACTTCCATTACGTCAGGTCAGAGTGTGGAGGTGCCATGCTCCCGTCTTTCAAAGACAACAGCGGGAGTCACGGCTCGCCGATCAACGGAAAGCTCCGCGGCGTCTTCCTCAGCTGCAACACAGAGTTCGACACGGGCCTCCCTCCCAAAGACTCCCCGTACGGCCCTCTGCGCTTCCAAATTTCCGCCGACCGTCTCCTCGGCCCGAGCACAAACCTCTACTTTGCTGACTTCTACTGCATGTACACAGCGTACCATTACGTGGTGCTGGTGCTGGCCCCTGCCGGATCGGAGGGGGACAGCTTTTGCAGCAGCCGCCTTCCACGACTGGACCTGTCAAGCAATCCCTTCCTGACGTACACGCCGGGAGACGCGGCAGTCTTCTGTCACGCCAGCGACGTCATCCTGGAGCTGCTGCACACTGAGCCCTTGCTTCTGGAGCACGGCATACTCGCTCAGATCAGCGGCCGTCACCAGCTCATGAGTCTCTCCACTGCAAACGCCAAAAAAGACCCCAGCTGTAAGGTGTGCAATATCAGCGTGGGCCGCTGAGCTGTGGCTGCTCTCACCGGAAGAGCAACCGGAAAACCAGACCATGAGGACCGATGTCTGGAAAGGGAGCCAAAGCTCTAACGAGAATCtgaatatatattcacaattaaaAAGAGGTATTTGGAATTCGAAAATAAGCCAAAGGCATTGCACAAAATGCATATAGATGAATGAGGTCGTGGTAGTCTGGCTACTAGTCTGACCACTTGTTATGAAATCAAGCCATATGATCTGTGAGACACCTATTTAGATCTTGaagcgcccctattatgggttcatattttggtattAGGAGTCATAAacaacatgcatgcaaggtcaaaaaacactttcattttcattttattacccTAACGACTCTTAAACGATTCACTTAGTCATCTCTCCAACCCCCCTGGTGATCGGTCGCTTACATTTAAAGCGGTGTTTGTACGCTTGCATCCCAAAAGCTTCACCTAGtgacaaagaatgaattagcattttcgaataaagatcaacaagtgggcggctaatatgctaatgtttcattttgaggtcaaagagaaacggcttgggactctTTCTTTCGAGAGACGATAAACTGTTCATTCACTAAGAGCTGTGCTACACACCGcacaaaagcttatttttttaaaaatccacaaTAGGGGCGCTTTAAAGagacggttcacccaaaagtgtttcatcatttactcgctgTCTGTTAAAACCTAAATGCGGTCCACGAGACTAGCGATGCATTTCgaaagtcttctgaagccatgaTGTGATAACTTGTCCGAGTCCACTTCTTTAAAGACTAATCAAGGTGACATTATTGAATTATGTAACcgattctatttatttttttatgaagtcaTTTGGGTTGTTACCTGTAATTAATTTCGTGAGtcgttgtgtgtgtatatatgcataaacGTGTTACAGTTGTCTGTACAGAATGCTTCAACATAGAATAAAACCCTTCTGAGAGTTTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97202 lncRNA downstream 3473 20928262 ~ 20928477 (-) True G65752
TU97200 lncRNA downstream 4970 20926611 ~ 20926980 (-) True G65750
TU97172 lncRNA downstream 39321 20886224 ~ 20892629 (-) True G65728
TU97173 lncRNA downstream 41597 20886224 ~ 20890353 (-) False G65728
TU97177 lncRNA downstream 50517 20881022 ~ 20881433 (-) True G65732
TU97213 lncRNA upstream 5894 20949198 ~ 20951698 (-) True G65759
TU97226 lncRNA upstream 13630 20956934 ~ 20957958 (-) True G65764
TU97275 lncRNA upstream 65671 21008975 ~ 21012134 (-) True G65792
TU97277 lncRNA upstream 70120 21013424 ~ 21014936 (-) True G65793
TU97278 lncRNA upstream 73168 21016472 ~ 21017235 (-) False gna14a
XM_043247354.1 mRNA downstream 12850 20917028 ~ 20919100 (-) True LOC122350675
XM_043247600.1 mRNA downstream 109898 20772439 ~ 20822052 (-) False tcf7l1b
XM_043247601.1 mRNA downstream 109898 20772442 ~ 20822052 (-) False tcf7l1b
XM_043247598.1 mRNA downstream 109899 20771693 ~ 20822051 (-) True tcf7l1b
XM_043246089.1 mRNA upstream 71689 21014993 ~ 21025831 (-) True gna14a
XM_043246871.1 mRNA upstream 163556 21106860 ~ 21129774 (-) False klhl22
XM_043246870.1 mRNA upstream 177285 21120589 ~ 21129773 (-) False klhl22
XM_043246869.1 mRNA upstream 177285 21120589 ~ 21129773 (-) False klhl22
XM_043246874.1 mRNA upstream 177285 21120589 ~ 21129773 (-) False klhl22
XR_006251697.1 other downstream 478819 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1498815 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1498815 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1729573 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1892399 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 828164 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 841400 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1070669 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1085428 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 1121594 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile