RNA id: XM_043247001.1


Basic Information

Item Value
RNA id XM_043247001.1
length 7956
RNA type mRNA
GC content 0.52
exon number 28
gene id hcfc1b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3880287 ~ 3898517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGAGCGCCTGTCAAGAAGATGGCGGCTTCCTGGGCGGCATGAAAAGATGTAGAGTTAGCAATATCTACAGTGAAAGGCGCACCCAGGGTCGAATTCGTTCTCTGAGTCCTCCCTCgtgatttttaaattaagttaacgAATCGGAACGAAGAAGTGGACATGGCTTCTTCGGGGACCTCGGTTCTGCAGCCGCGCTGGAAGAGGGTTCTGGGCTGGTCTGGCCCGGTTCCTCGCCCGAGACACGGACACCGAGCTGTGGCCATTAAAGAGCTGATGGTGGTGTTCGGCGGAGGGAATGAAGGCATTGTAGACGAGCTGCACGTCTATAATACAGCCACCAATCAGTGGTTTATTCCTGCTGTCCGGGGTGACATTCCTCCCGGCTGTGCCGCATATGGATTTGTGTGCGACGGCACTAGACTCCTTGTGTTTGGGGGCATGGTTGAGTACGGAAAGTATAGCAATGATCTTTACGAACTACAGGCCAGTAGATGGGAGTGGAAACGTTTGAAGCCCAAAGCCCCCAAGAATGGCCCACCACCATGTCCTCGCCTGGGCCACAGCTTTTCCCTGGTTGGAAACAAATGCTATTTGTTTGGTGGACTGGCAAATGACAGCGAAGATCCCAAAAACAATATTCCCAGATACCTGAACGACCTCTACACACTCGAGCTACGCCCGGGGTCTAACGTAGCGGGCTGGGACATCCCCATTACATACGGTGTGCTTCCTCCTCCTCGTGAGAGCCACACTGCTGTTGTCTACACAGAGAAAACGTCCAAAAAGTCTCGTCTTGTCATCTATGGCGGCATGAGTGGTTGCCGTCTTGGAGACCTCTGGACTTTAGACATAGATACTTTAACTTGGAATAAACCTGCCATAAGTGGTGGGGCCCCTTTGCCCCGCAGTCTCCACTCTGCAACCACTATAACCAACAAGATGTTTGTGTTTGGTGGATGGGTTCCTCTGGTCATGGATGATGTCAAAGTAGCCACACACGAGAAGGAATGGAAGTGCACTAACACACTGGCCTGCTTAAATCTAGACTCAATGTCTTGGGAAACCATCTTGATGGACACGCTTGAAGATAATATCCCAAGAGCCAGAGCCGGACACTGCTCTGTGGCTATAAACAACAGGCTTTACGTCTGGAGTGGAAGAGATGGCTACCGCAAAGCCTGGAACAACCAAGTTTGCTGCAAAGATCTGTGGTATTTGGAAACGGATCGCCCTCAGCCTCCGTCACGTGTGCAGCTGGTCCGTGCCAACACCAACTCTCTGGAGGTGAGCTGGGGGGCAGTGCCTACCGCTGACACTTACCTGCTGCAGCTGCAGAAATATGACATCCCTGCTGCAACAGCTGCCACATCGCCAACGGTCAACCCAACCCCGTCTTTACCCATCAACTCGCCTAAGAGTCCGGCACCCGCCGCTGCTGCTCCTGCAGCTCAGAGTCTGCCCCTCACTGGGGTCACAATGGTGCCACAAGTTCCTTCGCCCACCACCGCCATGCCAAGCAGCCCGCTTGCAGCCTCACCTCGTGGACCAGCTATTCTCAAAGTGGCAGCGCCTCATTCCACCCCTGGGACGTCAGTCGTTACTGTACGTCAGGCTACTCCAGGAGGGAAATCCCCAGTCACGGTTACATCACTTCCTGCAGGTGTCCGCATGGTTGTTCCTGCACAGAGCACCCAGGGGACGCCAATCGGCAGCAGTCCTCAGATGAGTGGCATGGCTGCATTGGCTGCAGCCGCAGCTGCCACACAGAAGATCCCGCCCTCTTCCACGACCACTGTGCTAAATGTCCCAGCCGGAGCCACCATTGTAAAAACGGTCGCTGTGACTCCTGGATCCACAACTTTACCAGCTACTGTCAAAGTAGCTTCACCTGTAATGGTTACTAATCCTGCAACCCGAATGCTGAAAACGGCTGCAGCTCAGGTCGGCACTTCTGCCATCTCTACTCCTAACACTCCGACTCGGCCCATCATCACAGTGCACAAATCAGGCACAGTAACCGTAGCCCAGCAGGCTCAGGTCGTCACTACCATGGTTGGAGGAGTCACTAAAACTATAACCCTCGTTAAGAGCCCCATTACAATGGGTGGCAGTGGTCCTCTGATCTCCAGCCTTGGGAAAATGATGTCTGTTGTCCAGACCAAACCAGTACAAACCTCTGCGGTCACCGGGCAGGCTGGAAGCAGTCCTGTTACTCTTATACAAACAAAGACTCCTCTGCCTGCTGGTACCATCCTGAAACTGGTCACATCTGCCGATGGCAAGCCCACCACAATCATAACAACAACACAGGCAGGAGGGGCTGGCACCAAACCCACTATCCTGGGCATCAGCACCGTCTCTCCAACTGCCGCCAACAAACCCGGAACCACCATTATTAAAACCATTCCCATGTCTGCAATCCAACAAGGAGCGGCAGGTCTGACTACCAGCTCTGGTGTCAAGTCCCCCATCACAATTATCACAACTAAGGTTGTTACTCCTGGCACGGGTACTCCAGGGAAAATCATAACCGCTGTGCCAAAACTGACTGGTGCGGGACAACAGGGGGTCACACAGGTGGTGCTGAAGGGGGCACCAGGGCAGCCCGGCACTATCCTGCGCACTGTGCCTATGGGTGGTGTGCGTCTGGTTTCACCAGGCAGCGTTTCTGCTGGAAAACCAACTGTTACCACACTGGTGGTCAAGGGCACCACGGGAGTCACAACTCTGGGTACAGTAAGTGGCACTGTGTCGACTAGCATGGCAGGAGCCAATGTGGTAAGCGCTAATGCCAGCCTAGTGACTCCAGTCACCACACTTGCCTCTATAGCCACATTGTCCAACCAGGTTATCAGTCCCACCGCCATTACTGTATCTGCTGCCCAGACCAACCTTGCCACTGCTACAATACAATCGGCAGCCCAGCCTACTCAAGTAACCCTCATCACGACTCCAAGTGGTGCTGAGGCCCAACCTGCACAGGATCTTCCTGTCTCCATCCTAGCCTCTCCCACTTCAGAGCAACCCTCCACCACTGGTGCTGATGCTGGTGACGGCGCTGGCGATGGTACTACCACTGTGACACTGGTCTGCTCCAACCCTCCTTGTGAGACCCACGAGACAGGAACGACCAACACGGCGACAACGGCTTCTGCTAAAATGGGCACCGAACAGATTTGTTCCAACCCTCCTTGTGAGACGCACGTGACGGGCACCACCAACACAGCCACCACGGCCTCTGCGAACATGGGCAGAACACAGCAGGTGTGCACCAACCCACCCTCAGAGACCCACGACACAGGCACCACCAACACAGCCACCACTGCCAGCTGCAACATGGGATCTAAAGAGATGGGAACTGTGAACAGCAAGACGGCAGCGTCTTCGTCAGCTACGTCTTCAGCTTCTGGTTCGGAGCCAGCAACACCCGTCTCGGAGAGCAGTGGTGGATCGGGCCCCATGCGGCCGGAGAACCTCCGCACagggaccaccaacacctctaCTACCGCCCGCTCCAACATGGGCTCAGACCAGACGGGAACGGTGCAGAGCTCCAACAAGAGCCAGGCAGCCATCTCCTCTACGCTGATGCCTGTTTCCGCCAACTCTCCCGGCGAAACGAATGAGACGGGCTCCGCAAATGCTTCACCTGTGTCTGGTGATGTCCAACAGGTCTGCTCAAATCCTCCCTGTGAGACACACGAGACAGGCACGACCGACACGGCTACTCAGTCAAGCTCTAATACGAGCAGTGGACAAACCAATGTTGTACAGAGGGTGTGTTCCAATCCCCCATGTGAAACTCATGAGACGGTTACCACCAACACACCGACCCAGGCCTCATCTAGTATTGGTGTTGGACAGAATGCCGCTGTGCAGCAGGTGTGCTCCAATCCGCCCTGTGAAACCCATGAAACGGGCACTACAAACACACCGACCCAAGCCTCGTCTTCTATCGGTGCTGGACAGAACGCCACTGTGCAGCGGGTGTGTTCCAATCCACCCTGTGAAACCCATGAAACGGGCACTACAAACACACCTACTCAGGCCTTGTCTTCTATCGGTGCTGGACAGAACGCCACTGTGCAGCGGGTGTGTTCCAATCCACCCTGTGAAACCCATGAAACGGGCACTACAAACACACCGACCCAAGCCTCGTCTTCTATTGGTGCTGGACAGAATGCCGCTGTGCAGCAGGTGTGCTCCAATCCGCCCTGTGAAACCCATGAAACGGGCACTACAAACACACCGACCCAAGCCTCGTCTTCTATCGGTGCTGGACAGAACGCCACTGTGCAGCGGGTGTGTTCCAATCCACCCTGTGAAACCCATGAAACGGGCACTACAAACACACCTACTCAGGCCTTGTCTTCTATCGGTGCTGGACAGAATGGTGCTGTGCAGCGGGTGTGCTCCAATCCACCCTGTGAAACCCATGAGACCGGCACCACCAACACAGCCACAACAGCAACAAGCAGCTTAGAAACTGGAGAAGGAGCAGCCCAGCAGGCCGGTGATGGACAGAGTGACAGCGGCACCAGCTCAGAACCCTCATCATCTACAGAACCAGCCAATCCCACGACGCAAAGCAGAGCCATCACAACAGTAACACAGGCCACGCCCACTCCAGGACCATCTGTACCGGAGATCTCATCCATGGCTGGATCTGCGGTAGTGGCTGAGGTCCCAGGAGAGGCCGAGGCCATGGAGCAGACCAGCGCTGAGGCCGTGGCGGTGGGAGAAGAGCCCATGCAGTCCGAGTGTCAGGGAGAGCTGGGTGAAGAGGCAGCCGTCAGGGTCGTTGCCATCGATGAAAGTGCAGAGGGTGAGGAGGGCGCCATGCTACAGGTTCATGTCGCCATGGAAGCACAGCCAGGACAAGGAGATCAGGCAGAGCAAATGGAGGCTGGTGTGGAGGGCGCAGAAGCAATGAGTCTCGCTGCTCAAGACTCAGAAGCCCTTGCTCTGCCTCAGGAGCTGATGTCTGCAGAAGGACAGCAAACCACCCTCATGGTGACCGGACTGACCCCAGAGGAGCTGGCAGTGACGGCAGCGGCTGAGGCTGCAGCACAGGCTGCAGCTACAGAAGAAGCTCAGGCCCTCGCCATCCAGGCTGTCTTACAGGCGGCTCAGCAGGCGGTGCTCAGCGAGGCAGACGCAGGCCACGACGGGCAGCCAACCACCACCATCCCTATAGTTTTGACTCAGCAGGAGCTCGCCGCTCTggttcagcagcagcagcagctccaggAGGCGCAGGCAGCCGCAGCCCAGCAGTTAAGCGCTGAAGCAGCCGCAGCGGCACTGCCCACTGAAGGCTTGGCACCAGCAGACAGTCTCAATGACCCAGCGTCTGAGAGCAACGGCCACGAAATGACAACTGCTGTTGTGGGAGCTGTGGCCCGTCTCCTTCCACCTCTAGCCCCATCAAGTACTTTTGCACCATCTCAGCCGATGGTCGTTGCCAGTCCAGCAAAGATGCAAGCGGCAGCTGCTTTAGCTGAGGTGGCCAATGGGATTGAATCAGTAGCTGGGAAGCAAGAAGCTCCTCCACCTGTTGTAAAGCCACCGGTGAAGAAAGAGAATCAGTGGTTTGATGTCGGAATCGTTAAGGTCACAAACATGGTTGTCACACACTATTATGTGCCAGCAGATGATTCTGCGCTCACTGATGATGATTCTGGCACAATCCCAGACTACAGCCGAATGAAAAAGATTGAGCTTTCTCCGGGCACTGCATACAAGTTCCGTGTGGCCGGGATTAACACGTGTGGCCGTGGGACGTTCTCAGAGGTCTCTGCATTTAAGACATGCTTGCCTGGCTTCCCTGGAGCACCGTGTGCCATCAAAATCAGCAAGAGTCCTGATGGTGCCCACCTAACCTGGGAGCCTCCTTCAGTGACGTCAGGGAAGATCATCGAGTATTCGGTGTATCTGGCAATCCAAAGCTCACAAACAGTTGAGGCTAAAGCGTCCGCTCCGGCTCAGCTTGCCTTTATGCGGGTGTACTGCGGGCCCAACCCGTCCTGCCTAGTGCAGTCGTCTAGCCTCTCCAATGCCCACATCGACTACACCACCAAACCCGCCATCATCTTCCGCATCGCTGCACGCAACGAGAAGGGGTACGGCCCTGCAACGCAAGTCAGGTGGCTACAAGAAACCAGTAAAGATGGCTCTGCGGCCAAACCTGCAGCAAAGAGGCCGGTCTCGTCACCTGATATGAAAGGCGCCGGTCCAAAGAAGGCCAGATCTGACCAGTGAGAGTTCACCGTGACACCTGACCCCGCCCCGTTTATGAGCTGAACCATGACTGAACTCCACCTCCTGCTGAATGACCTTCCTGCTTTCACTTCTCAGCCCATTCCATCCTCTGCAATGAACCCGGAAGGAAACTGCAGCCAAAAATAGGAAAACGTTCAAAACAAGGAAAAAAGCTTTCCGTTTTTGAGAGATCCGTTCCTGTCACTGGACATGTTGGTGCCATGGACGCCTAATTTccaactgtatttttaacaaaaaaaaaaacaaatgttcctCCTCAGAAGCACATACATTTGCTTTTCCTGACGATTTTGTGTAAAGAGATTCCAACAGCAGCGTTCAACCTAGTTATAACTGTATTATCAGATACTCATTCTTTGTTTTCCTCCCttgatattcatttatttttaagcttatTTCAATACAAGCAATAGATAACGACAGAAAAATAACTTTGCTCTCTTGTCAGTTTGttgatgttttcattgtttGGGAGGTCTGTATATTTCAACCGCGTGCTGAAAGGAGACGGAGACACGGAGGAGAGAGTATGGAGGGCGAAACGAAGCAGGGGAAACGCATCAAAGTCTAAGGAAAACGGACAGCACTTGGTGACGCTTGTGAGGGAAAAGACTCAGTTCGTAATTATTCATTCACTTCGAGTTCAGTAGCCTGTTTTGCATCACTGTGTGTTCATACATTTGCTGTGAGGGACAATTGAGGACCGCAACGCTGAAGACTAAAAGGACTTCGATCCATGTAGATGAAAAGCATACTACTTTTGCATTGCATCAACTAGATCTTgtataaagagagaaaaaaaaaaatcccaaaaataGTAAATGGTGATACAGGAGTTCTTTGTGtgtggtttatttttgtattattatgttttgttttgttttttttctttttaaataagaaaaggtATTTCCTTCTCATGTGTTTGTGCTTCAGGGCGCAGTTTTAAACCTCACACCCCTGCTCAACATGTTAACTGCTCATTCCTGTAGTCTCCATGCTTGTGGATTTGACACGCGGGTCACAGTGTTTCCCGTGTTCAtgaattatttcacatttatttgggGAATTGtagtgtaaaatgtatgtatttgttcTAAACAACGACCCACTTTTGAGGCTTTCTCCACCCAACTTTTTACTTTTCGGCATTTATAGAAGCTTACCGCAGaaaaaaagatgcttttatttttgtttccctCTTGTCATTAGTCTATAGTTCCTGTACATTTACTTTTCTGAATCTCACGTTTCTTTTATACGCTTGGTTTTGTGAGTTGCTAGATATGAGTTGGGATTCTTCTCAAGCTGTGCGGCAAAAGTTTGAACCATTTTCATTCTCTGCTTCGGACTGTTTGGACTTATGGATGCAGGCCTGTGTAAATGCGAAAACGCTGAAAAGTCGGGAGAGGTTTTGATTGGTATGTCTTTTTTGAATGGAAGTTAGAAACAGTTTGTTCCTGTTTCTAGTGGTTGGGAAATGTTGCTGATGGATTGTTGGCTTAGCCAGAGTTTGAACTCAGTTGTAAATTAGTTCTTTCACGTAGCAAgacgtacaaaaaaaaaaaaactctttgccttttttatataattatctgtaacaaaatgtttttacatgttgTCATCTATTGATTGCTTTTGTGTCTTGACATATAAAAGTAATGGAATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90051 lncRNA downstream 27485 3831486 ~ 3852802 (-) True G60858
TU90035 lncRNA downstream 115204 3762453 ~ 3765083 (-) True G60850
TU90015 lncRNA downstream 146092 3733335 ~ 3734195 (-) True G60839
TU89998 lncRNA downstream 173981 3704732 ~ 3706306 (-) True G60830
TU89990 lncRNA downstream 198521 3677250 ~ 3681766 (-) True G60822
TU90212 lncRNA upstream 71927 3970444 ~ 3996691 (-) True G60932
XR_006251682.1 lncRNA upstream 100320 3998837 ~ 3999610 (-) True LOC122351087
TU90228 lncRNA upstream 100458 3998975 ~ 3999574 (-) False LOC122351087
TU90233 lncRNA upstream 103102 4001619 ~ 4006782 (-) False zgc:113363
TU90222 lncRNA upstream 122366 4020883 ~ 4024734 (-) True G60937
XM_043246240.1 mRNA downstream 692 3875721 ~ 3879595 (-) True cdk20
XM_043247561.1 mRNA downstream 6709 3867480 ~ 3873578 (-) True gata1b
XM_043247789.1 mRNA downstream 15935 3851494 ~ 3864352 (-) False hdac6
XM_043247788.1 mRNA downstream 16199 3851494 ~ 3864088 (-) True hdac6
XM_043247790.1 mRNA downstream 17857 3851494 ~ 3862430 (-) False hdac6
XM_043247002.1 mRNA upstream 850 3899367 ~ 3908886 (-) True irak1
XM_043247004.1 mRNA upstream 10916 3909433 ~ 3921951 (-) False mecp2
XM_043247003.1 mRNA upstream 10916 3909433 ~ 3921951 (-) True mecp2
XM_043247986.1 mRNA upstream 101814 4000331 ~ 4006806 (-) True zgc:113363
XM_043247987.1 mRNA upstream 101814 4000331 ~ 4006805 (-) False zgc:113363
XR_006251616.1 other downstream 29697 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 845195 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1067180 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 1328101 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 1415916 2460931 ~ 2464371 (-) True G60564
TU90264 other upstream 190207 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 402475 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 494696 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 1288798 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 1298094 5196611 ~ 5197889 (-) False LOC122349940

Expression Profile