RNA id: XM_043247003.1


Basic Information

Item Value
RNA id XM_043247003.1
length 6912
RNA type mRNA
GC content 0.42
exon number 3
gene id mecp2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3909433 ~ 3921951 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTCCGAAGGATGGTGTTGTGTTAGAGGGAGTGGGAGAGGAGGGTGAGGGGTACCCACAAAGATGTTGCGTGATTTTTtggaaatttatttatttaaataaaaatggccgCCGCAGAGAGCGGAGAGGAGAGACTCAGAGGTGAGGACAAGAATGAAGACCAAGAGGGCTCAAAAGACAAGACGCAgaagcagaagaaaaacaaaagggaaCGGCAAGATGTGGAAAAACTGGAGGCCACAGTGTCCGTTCCTCCACCCCCGCCCCTCCCCACGCAGGGGGATGTTGGACAACGGACGGAGGCAGGGAAGTCTGAACCCATTGACCCTGAAGTCGGAGCTGCTCTCAGCGCTCCAGAATCTTCTGCATCGGCCAAGCAGCGGCGTTCTATCATTCGGGACAGAGGCCCACTGTATGACGACCCTTCACTGCCTCAAGGTTGGACGCGCAAGCTGAAACAGCGCAAGTCGGGGCGATCCGCTGGAAAATTTGATGTCTACCTGATCAAcccaGAAGGGAAAGCCTTCCGTTCCAAAGTGGAGCTCATGGCGTACTTCCAAAAGGTGGGCGATACCACCACGGACCCTAATGACTTTGACTTCACAGTCACGGGCCGCGGGAGCCCCTCTCGCAGAGAAAAGAGACCGCCAAAGAAGCCTAAAGTAGTCAAACCCTCCGGTCGCGGGAGGGGGCGGCCGAAAGGCAGCGGCAAAGTACGGCAGGCCACTGAAGGGGTGGCTGTAAAGCGTGTTATAGAAAAGAGTCCAGGAAAACTCCTCGTAAAGATGCCCTTTGTGGCCCCCAAATCTGAACCAGGGGCTCCAGTGGGGCAAGCGCCAGTTGCCAAAGTGCGGCGAGGCCGCAAGCGGAAATCGGAAAAGGAGCCGCCAAGCACGCCTAAAAAACGTGGCCGCAAGCCAGCAGCCGCTTCGCAGTCGGCGGTGGGGACTGGTTCAGCTGCTACATACGCCGCCGCAGCCATCCTCACCGCCGAGGCTAAGAAAAAAGCTCAGAAGGAGTCTTCCGTAAAGCCTGTTCAGGAGAGGGCGCTTCCCATCAAGAAACGCAAAACTCGAGAGACTTTAGAGGAGTTGGAAGGATCCACCGCTTCCACGACGGAGACCTTCACACCGGGGATAGCAAAGCGACTGACTGCATCAACTGTGACCCCTACTGGGGAGGAGGTAGAAACGAAGTCTCACAAGCATCCTGTCCGGAAGTACAAAGAGGCGTCCACGGATCCAGGGAATGGCAGCAGCGGCAGTGGGACGGCGACCAGCGGCAGCGTACCGAAGAGTCACAAGAAGAGAGATCAGCGAGGGCAGCACTTTAaacaccaccaccatcatcaccatcaccaaCACCACCATCTGCAGGCCATGCCGCCCTCCACCTACACCCCGCAGGCTCACCAGCTCTCCCTAGGTCACTCCACGCAAGGGGGGCCGCCTGCGATGACGGAAAACGAACCCCAGGACTTGAGCACCTCCAGGCCCAAAGCGGAGCACTGCAGGGAGGAAGCCAGAACTGATAGCTCCTCGAGCAGGGACGCTCAGAACGCAAGCAAGATGGCCTCCTCTGACCTGAGAGGGCAGCAGATGACTGTGACGGGGGATGGCAAGGAGCTGAGAGACATTGTTCCTCCCTCTGCCGTCCCGAGGCCGAGCCGAGAGGAGACGGTCGAGTCCAGGACACCAGTGAGCGAGCCAGTGAGCTGACTGACTTAAGTGACTGATGGGCGGGAAGAGGCGGAGGCGGCCGCGGGCGAGACGAGTGATTTCTCGTTCTTTTTTACtgaggaaaagaagaaaaaggaaacaaaaatatacaaaaatgtaaacgtaCTTAAACAAAAGGCAGCTGTTGTCTCGTTCTCTCTGTGGGTTGGACGCGGGGCGATAATTCTCTTTGCTTCCGGATGAATTCTCTGCTAAACCTTTTCTTTATGGTTTCCTTTTATTTCCCACTATATCTTTGTATTAGTATATCTTAGCAGTCACCTAAACCAGTTATTCCTTTGTCAGAGCTTGTAggaagtagaaacacactcaagtGGTAATGGATACACAAGTCACACGCCATAGTCGTAGTAAAGCGAAACTTTCCGATCAAAAAATGCGCTTGAAAGTACTGCAATGCCTCAGAGTCATGTCATCTCAACCCTAGCAAAAAGGTGTCCTATCAGTGTCTTTCTTTTGTGTCTAAACGAATGGCAAGCTGAGGAAGAAAGGGCCACATTTTCCGATCTCCACCTTTTCCATTTGAATTGGACGCAGCTGTTGCAGCATCCTCACCCTTGAAATAAGACGCTAGCTTAACTGACAGAAAAGAACTTCCTAGTTGCGAGTTCATGCCAAGCCTACATTTCCAGCCTGTTGACCTGTGAAGATCAATTGAATTTGGAAgtagtatttctttttttaagcacaCGTCTATTAATTATGAGTAGTTCGGTTAACCTAAACACTTGTTTCGGCGGTGCCtgagaaaatgcattttcttcgGTGGGGCAGATAAAgcacaaatgtatttgttagGGTATATTGAAAGCACAGTCCAGTGTAGCATCTGGAGTAGATGTCAACTCGCGTAAAAGAATACGAGAAAAGGAATTACGTTTACctgcttttttttccatgaagtacaatttaaaaagtggCCTTGTGTTCTTGCGACACAAATCCCTAACAAAAAAAGCATACCGTTTCAAATGATGTAGCTTTtggttttattgtgtgtgtggttcataGACTAATCCCATAGAGCTGCTGTTCTAAAAACGATTCTGACGGGAAAGTTAATAGAtggctatatttatataatgtcttGTCAGGCTGTAGCTGTGTCAAATGCATGGGTTGCTGATGTTTGCGTGCTATTTATTACAGTACTCCGAGTTTGTCTTTCTTGTACATAAAGCCACGTTCAGCACCAACCATGAGGGTCAAACATTATAGATACTTAGATATTTCGAATCATGagtattattaaacattacttGGCAACAAATTAAAGAGAAACCTGCATACATCGTACAAGACCATGCAATTACGATTAGTTCCATTAGTTTTCTAAAGcctacttttttcaaaatggcAGAGAACATTTGCAATCAGAAAGAAGGACACCAAATCACAGCTCCGTGCGCAAAGTTGTTAGAGATTGGACATACTAAAGATGTCTTGGTAATTAATTTGATTGTACCTTTGGGATGAAGCGTAGTCCTAAGGAAATTCTGAACCAAAACTGAGGAAGTTCTTCTTTGTTGATTATGTTAAATAGATTTTGCTTTACAGCACTTTtcctgtttcatttttgtttcttcttctagATGAACTGCACCTTACTTTTAGAACGTCTTCACAGAATCAAACATTGGACTTAAGAAAAGCCTACCAATTTATTTGCGTATATTTTTCTGGTTAGCCTTGCACAGACTTCTGTTTCATGTCCGGAGGTTGTTACTTTTTTCAGATGTGCGCTAGATTAGAATGCATGTTCAGTGTCGTTATAAAGAGCCATTCTAccttttctgtaaaaaaaacaaaacaaaacccatATTTATGAAATCATCATGCATAAAGGCTACATTTCACCAATAATAGTGTTGGGTCAGGTCAGAGTCGAGTCCAAATCTTTAGTCAATTTGTGAGTGggaaatgatttttaatttcttgtcatcataattttattttgtttatctatCATGTTTCACATGATGTGGATTCGACTTTACTCTGTAAAGAAGGTCTGAATGTCATAATCCGTGTCAAGTTCCACCCAAGTGCATCCAAGTCTGAGTTCACTCATAATAGCAGTCCAACTACCACATCTCTAACTTAAAGTATTTGAGATCACATATTTATGGCCAGTAATGAGATGACAAAGGCAGTTTGTAAATGTCCTGATGTTTGACTGTTACATGCAACTCTGTGTGCTTGTCTAAtctaatagaaataaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacattattataaattatgtataaaaccAATTACAGACATCTGGGTCTGATTACGgattatgattttgttttatagatAATGCAATTGCTGTTTCGAGTGAGAGTTgctgctccttttttttttttttttttcccaaagtattgtggtcatttttttttgtgtatgaaATCTTCACGGTTATTGTGGCATGGGTGATGGATGTGCATTGTCACTGacataaatgctgaaaaatatgtACAACTAAACCTTAATCAGAGTCATAACACTTGTTAGATCTTTTGGTCTGGTAGTTCAACTAGAGCatggtgtttgtttttgtttgggttttttttttataaacttgcTATCGTTTAGGAGATCAGTTGCATGCGAGAGAGAACTTGCTGGCCCTTTTTTCCGAGAGTGTTTTAGAGTAGGCCGTTATCTGGaatcttacttttttttgtcgCTAAATGTGTAGATTAAATGATGATCGACAATCACGAAGaacattgcatatttatttttcccctcGAGTCTTATTAAGATTGAAAGCGTCTCCATTCTCTTCCTCCGGCCTCCCGCTCCCTCGACCCTCACGGGGGGAAGAGGCACAGAGAATAAAAGAGCGTTTCCGCTCTCCGAACAAGGGCTATGTAATCATTTCAAGTAGTCTAAAGCAGATGAAGGAAATTTAAGGACTGAAGGATTTTTAAGTCAGAGGAATGCACGTCTGGTCCTCGCTGCGAAGGCAAACTCCGTTAATTGCTTGAGGTCAAACAGGAGACTTTAAGTGTTAAAGTCAAACACCACCGGCTCACCCTCTGTCCTTGGCAGAGCTTGAGCGCTCACTTAACCGGCGGCTGACGTTGTGACCTGTCTGCGGTGAACGTCTCCCCTGGTCTGACTAAACTCGGGCGGGAGATCGGAGGTAGACGAATGGATTCCTCGGCAAGCACATTTCTCAGTTACAGAACCTCCAGACATGAATTGAAGTTACGACTCCCAAGCTGCATCCGTCTGGCTGAAACAGAAAGGGTAGTGCCTTTATTTTGGGAGACTTACTAAGGTGGTAGAAGTGACCTTTGATTCTAAGAAACACCTTTATCCCAATGAAGCAACGTGGAAGGTGAATTTACTCAAATGCTTGGATTTTATTAGGTCATTTTTCATTGGTAGGATGtgcactggtgtgtgtgtgtgtgtgtgtgtgtgttgtaactagggtttcattgttcattttttctttcttttttttttcgcccCATTGGCTGGGCTAATGCGTCCACCTAGAAATGATGTATTGTTAAATACCCTCTGCTTTATGAACTTCTTGCCTTTTGTAGCGCTCAAAGCCCACTGACAAAAATGGAGCCCTACAAACGGGTAAAGACAGGATAAGaagattacttttattatttatacatgttggtttgttttatttcctgtttttgtttgggTTATTTGTGCCTCTGGCAGTGAAATATGCTTTGGAATGTCCTTGTGTCCCtgtagccaaaaatacatgcTATGTACGTGAACATGTATCAATATGCATGATTGCCATTAGAAGATAGGACATTGCTTGCCctttactattatatataagaTGTTTTCAAACAGCACTCCAAGAGTTGAGCCCAACCACACCAACCGAATCCGAAGAGTTTCATGAGGTATACAATACTGAATGTTTTCCGTTTTAAATGAAGGTTGTGCACTTCAGGTCTGCTTTAATACGAACGGATTTGTttcatttgaagtttttttttgatttaactCTTCAAGGAGCGGCTTCAAACGCCGCTCCTTGTAGTGGCTAGAGTAATTCGTAGATTTCTGTGTTAGATTTATTTTCatcagtagtattttttttttctcttccgaTTATAAATCCAACTTAAGACGGTTCTATCTTCATAGCAATAGTGCACCCAGCAGATCGGATATGAGTTTCTCCTTTAGTAGGTCTCCGATTTGTGTAACAGTAGGACTGAAGTAAAAGAAATTTTCCCTTACGACTAAAATGCAGCACTTTGCAAGGAGGACAAATTCAAGTAAATGAAACAGAAGTTAAAACTATAAGAAATAGATTCCAGTTCCACCGTGGTAGAAAGTTCATGGTCTATTTAACATAGTCTTGTGCCTTGAAGTTTCAGTAATAGAATTTATCTTTATACtgtagttgtatttttattccgAGTCCTGTGTTTGCCTCTTGTTGGTATTCAGTGCTTTGGATGTATTAAGGATTTATAGAGATCAAGAATATGTTTGCCttgctttattttcttaattgagaaaaaaaaaaaaggataacaTTAGGGAGATGTACTTGGGCAATATTGTCGATGTAAAAAGCTATaggattttgatgttttttttttttgtttttcatcccTGATATGTTGAATGTTTCACAGATTATTAAGTAAAGTGTGTTCGTTGGGAAATATTCTCCATTTTAACGAAAAAACTTGGCCTCAAACATAATCTTCCAATCACATTgcattttatggaaaaaaaaaaacaaaaacttcaaCCTTGACCGGAAGGACAACGAGTCTAAGATCTGCACTTTATAAAGTATGTTTCCCGGCAGGACACCCATTAactttttgtatgtgttttttacCTTTGTccaaagctgttttgttttcatattattttttaatttagtttcaaaTAAAAGGGATGGGTAGTatgtatctaaaaaaaaaaattattttaaccaaaCAGACTAGGTGTCAGTGGTAATTCACCATCTGCCAAGCCTTGCCTTCCTGACAGTGAAAAGTATAGTTTGTGTCTACTTttatagtaatgtgttactgtataATTTGTTTGCCGTATGTAACAGATACACAATAGTAAACAACATTTACCTGC

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11588 MECP2; methyl CpG binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90051 lncRNA downstream 56631 3831486 ~ 3852802 (-) True G60858
TU90035 lncRNA downstream 144350 3762453 ~ 3765083 (-) True G60850
TU90015 lncRNA downstream 175238 3733335 ~ 3734195 (-) True G60839
TU89998 lncRNA downstream 203127 3704732 ~ 3706306 (-) True G60830
TU89990 lncRNA downstream 227667 3677250 ~ 3681766 (-) True G60822
TU90212 lncRNA upstream 48493 3970444 ~ 3996691 (-) True G60932
XR_006251682.1 lncRNA upstream 76886 3998837 ~ 3999610 (-) True LOC122351087
TU90228 lncRNA upstream 77024 3998975 ~ 3999574 (-) False LOC122351087
TU90233 lncRNA upstream 79668 4001619 ~ 4006782 (-) False zgc:113363
TU90222 lncRNA upstream 98932 4020883 ~ 4024734 (-) True G60937
XM_043247002.1 mRNA downstream 547 3899367 ~ 3908886 (-) True irak1
XM_043247001.1 mRNA downstream 10916 3880287 ~ 3898517 (-) False hcfc1b
XM_043247000.1 mRNA downstream 10917 3880287 ~ 3898516 (-) True hcfc1b
XM_043246240.1 mRNA downstream 29838 3875721 ~ 3879595 (-) True cdk20
XM_043247561.1 mRNA downstream 35855 3867480 ~ 3873578 (-) True gata1b
XM_043247986.1 mRNA upstream 78380 4000331 ~ 4006806 (-) True zgc:113363
XM_043247987.1 mRNA upstream 78380 4000331 ~ 4006805 (-) False zgc:113363
XM_043245987.1 mRNA upstream 260396 4182347 ~ 4184911 (-) True tsr2
XM_043245984.1 mRNA upstream 263302 4185253 ~ 4215379 (-) False cdk16
XM_043245982.1 mRNA upstream 263302 4185253 ~ 4215377 (-) True cdk16
XR_006251616.1 other downstream 58843 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 874341 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1096326 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 1357247 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 1445062 2460931 ~ 2464371 (-) True G60564
TU90264 other upstream 166773 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 379041 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 471262 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 1265364 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 1274660 5196611 ~ 5197889 (-) False LOC122349940

Expression Profile