RNA id: XM_043247048.1


Basic Information

Item Value
RNA id XM_043247048.1
length 1582
RNA type mRNA
GC content 0.51
exon number 19
gene id si:dkeyp-117b11.1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1927729 ~ 1936872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAaatactcaaacacacacacacacgcacctccGGCACGCTACTTACTGGACTCGCATTCAAAGTTCTGGGGTATTTGCATCCAAACCTCACAGCGAAGAGCTTCCTGATGAACTGAGCGCCTCCTGCATCATGagTTTCTTTGGGAAGTTGAAACCATCTCTACTACACAGTGGGCCACCAGCTCCACCCAGGAGAACAGATAACAGTTCAGGATATGGCTGGCCAGAAGGGGAATTTGACGATGAAGATGGTGATACATATGAAGCTCCACCATGCGAACGTCCCACCGTTAAAGTCCAGCCGCGTCAAGTAGAGGAGAATGTTTACCTGGGTTATCCGGATCGAAACCCAAACCCTGTTATTCCCAAAAGACAGGCGGCACCACCGCCACggccggccaagatcacacccaAAAGCGTGAAGCCAGAACCGGCCCCCGACCCCGAGGAGTTTTACATCGACCCCAATGATAGCAAACCTCCTGAGGTAATACGTAAAGACAAACCTGGTAAAAAAGCCCCACCTAAGAGACCCCCGATGAGACCTCCACCGGCCCCTCAGCAAGACGAAGATGTTTACTTGGACCCAAATGAAGGACAGGATGAAGATACCTATCTCGAACCTGTAGCAGAACCTCCTGCGCCCCGAAGCCAGGCCCGTATACTACTGCCTCCTAAAAATGTAGGACGAGACCCGCCACCACAAATAATGAAACCTCCTGTTCCCAGAGCCAAGTCTAGTTCGGTCCTGATCGGTGACCCTGTGAACAAAGTTATGCCGCCGGAAGTCAAACGTGCCACGTTTTCTGGCCAGATGCCACCCGCACTAAACAGCAAAGCGGTTCCTCCCATCATCCTCCCCAAAGAACCCAAACCCAGtcctcctcctcctcctcctccatctctgGACGGCTCAGCGCTTTCTTTTGGAGCAAAGCCAGCCGCTCAGGAGGCGGGGCTGGAGGACCAAGAGTGGTTCGCTGGAGCTTGTGAACGTAAGACTGCAGAGGAAGCCGTGTTCAGGATTAAGAAGgACGGCACGTTTCTGGTGAGATACAGCAGCTCTCAGAACGACCGGCAGCCCTTCACGCTGGTCGTGTTTTACCGGCAGAACGTCTACAACATCCCCGTGCGCTTCCTGGAGGATTCACAGCAGTACGCGCTCGGGAAAGAGGGCAAGAAGACGGAAGAGCTCTTCAGCAGTTTGCAGGAGATGATCTGTCATCACACGAAGAACCCCATCCTCCTGATCGACCGTAAGAGTCAGGCTAAACACAGCACTCACCTCTCTCACCCCGTTCGGCCCTAACACCCCGTCCTGCTCTCTTCAAGCTCCTCCGCCTCACTCTCTGACAGAGTTATTTATTACGTTATGTTTGTAGCGCAGTCTGATGTTTATCTTGTGTCTCGTGTTCAGTGCATTTCACGTCTGGGGATTTTAGAGTATGGTGACTTATGTAGTGTTCATTGAATGACTTCAGTTAAActctacacatatatatatatatatataatgtttacaGGACAACTTGTTGTCTCGGtgtaaaatacttaataaataaagataaaaagaacacttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89115 lncRNA downstream 77796 1849488 ~ 1849933 (-) True G60237
TU89073 lncRNA downstream 147376 1726225 ~ 1780353 (-) True G60204
TU89101 lncRNA downstream 162186 1717401 ~ 1765543 (-) True LOC122349999
XR_006251551.1 lncRNA downstream 209267 1717401 ~ 1718462 (-) False LOC122349999
TU89469 lncRNA upstream 50901 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 54463 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 54463 1991335 ~ 1994745 (-) True G60473
TU89490 lncRNA upstream 100828 2037700 ~ 2039825 (-) True G60487
TU89547 lncRNA upstream 187186 2124058 ~ 2124341 (-) True G60510
XM_043246946.1 mRNA downstream 1007 1880738 ~ 1926722 (-) True cltcl1
XM_043247525.1 mRNA downstream 48830 1857920 ~ 1878899 (-) True si:dkey-178e17.1
XM_043247946.1 mRNA downstream 75190 1837123 ~ 1852539 (-) True si:dkey-178e17.3
XM_043247947.1 mRNA downstream 75194 1837126 ~ 1852535 (-) False si:dkey-178e17.3
XM_043247344.1 mRNA downstream 106079 1780400 ~ 1821650 (-) True pi4kab
XM_043247054.1 mRNA upstream 10269 1947141 ~ 1965053 (-) False plat
XM_043247053.1 mRNA upstream 10269 1947141 ~ 1965053 (-) False plat
XM_043247056.1 mRNA upstream 10269 1947141 ~ 1962204 (-) True plat
XM_043246847.1 mRNA upstream 59678 1996550 ~ 2008100 (-) False vdac3
XM_043246848.1 mRNA upstream 59678 1996550 ~ 2008098 (-) False vdac3
TU89063 other downstream 140676 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 172345 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 173813 1749147 ~ 1753916 (-) True LOC122349998
TU89107 other downstream 176361 1749147 ~ 1751368 (-) False LOC122349998
TU89094 other downstream 322616 1601521 ~ 1605113 (-) False LOC122350657
TU89498 other upstream 122522 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 122522 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 524059 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 586944 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 857262 2794134 ~ 2813107 (-) False rad9b

Expression Profile