RNA id: XM_043247050.1


Basic Information

Item Value
RNA id XM_043247050.1
length 1815
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122350512
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1936761 ~ 1946949 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAGAGAGTAGATGACTAAACGTAAATGTAATGCTACTTTAGGTAAAATAATACTACAGAATAATAAGGACTTTTATCCGAGACAGCCAAAAATTGTGTTCCTTAAGAAATAAGGAGACCtatcaaaacaaacatcatGTTGGCTCAAAGTCAGAAATAGATTTAAATGCTCTGAAGGTTTCAAATGTCAAGTTATTAGTTCCAAGAATCAGTAGAGGAAGTAGTAGTTTTACGTGGTCATGCAGTTTATCAAACATTAATCTCTGCCCAGCGCTAGaatgtaaaaggtttttttctggAGAGTAGACAGACACATGATGGATTAAAAGCAAACGGCTAACACTGGAAGAGGTCTGGCGTACCTGAACATGTAGGATGGCTCCTGCAGTTATTATCTGCTGTCTGCTCACCATTAGCTGCTGCTTAACAACGGCGATTGTGGCCGGTGGAAGTTGCGCGAATCCAGACCTGTGCTGTTCTGGATTGAATGACGGCTGTCACCGCTGGGATTGTTATTGCGACGTGGCTTGTCTGAGATATAAGGACTGCTGCCCTGATTTCAGATCCACCTGCCTCACAGTCAATAACAGCACCAGTGACTCTAAACCAAGCAGCACTTTGCCACTGACAGGTTCGTGTTCACACCCGGCTCTATGCTGCACCGGCTTCAACTACAGCTGTTTCAGCGGCTGTTTCTGTGACGAGGCCTGCGTAGAGCATAGTGACTGCTGTCCCGACTACAACAGTACCTGCATTTTCAGCAGCACTAGCGCACCTCCTCCGATCACCTCCACTGCAGCTCCACCAAAAGTAGTCACTGTTCTGGAGGTGAAGGTGAAGATGATGTTACCTGAAGAAGATCATCAGGCCGCTCTGCTTAAGgttGGCGCTGTGCTGGAGAGTCTCTTAAAAGGGAATAATACTGAAATCTACTCCTTTAAAGTCATGCAAATCAAACAGGTATCGCCATAGGACTGAGTCAGAAACCAGCTGAGAGGAACAGATGTGAATAAATGCTCATCACCGctcaatgtttattatattcaaccaaaaaatgtgtgtctgtgtttatgtgGGGGAATCCACTGCTGTTTTGACGTTGTCTTTATTTCTCTGATTTTGACATTTGTGTGTGATTATAATGCTGTATTTATAGGAAGAACACTTGTGAAGTAAGAAAATTTCGTGCTGCTGCTCCGTGACTTGGTTCGTTAGATGTTGCATGAATACTGAGCAACGTTTTTCTAGGAAATATGGAAAACAATGAGCAGGTTTTGACAGCTGGGGATGTTGGCCTCCAGTGTCAAGCAATGAGAAGAAAGTCTTATTTTATACCAGACTGCTTCATCAGAACCAGACACCATCGTGAGACagctttataaaataatgttctcATTGCGCCATTTTTAATTAGTTCTGACTTTTTAGGACATTTTCCCAGACTTAGAGAGCATGCTTTTATAGAAGCCCATTACTGCCACTGCAACTTTAAATGCACAGAGATCAGCTATAAAGGCAGTTGCAAGGAAAAAATGTCAGAACTCCAAGATAAACACTCTTGCAATTGCAGGGTTTaacttttaaacctttaaattaatatacaattgactttatttatttaaataccaaCTTTATAACTTCATGCTTATATCGcgaatttgattttatattccaGAATTGCTATGAACTGACagtcacaattctgagaaaagtcagaattgcaagatatattttaaatgtatatctcccaaatatgcatttatttctcataattgcaagttcatctcagtttttttgtttgttcttgcaattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 30490 1908528 ~ 1911167 (+) True G60258
TU89147 lncRNA upstream 30490 1909151 ~ 1911167 (+) False G60258
TU89128 lncRNA upstream 55218 1885248 ~ 1886439 (+) True G60248
TU88724 lncRNA upstream 115821 1755120 ~ 1825836 (+) True G59974
TU89162 lncRNA downstream 199 1947148 ~ 1950296 (+) False G60265
TU89161 lncRNA downstream 366 1947315 ~ 1950296 (+) True G60265
TU89166 lncRNA downstream 5844 1952793 ~ 1953126 (+) True G60269
TU89188 lncRNA downstream 20171 1967120 ~ 1999468 (+) False G60281
TU89187 lncRNA downstream 32837 1979786 ~ 1999468 (+) True G60281
XM_043247948.1 mRNA upstream 114246 1822636 ~ 1827411 (+) True snap29
XM_043247949.1 mRNA upstream 114246 1822679 ~ 1827411 (+) False snap29
XM_043246172.1 mRNA upstream 134255 1802695 ~ 1807402 (+) True serpind1
XM_043247341.1 mRNA upstream 292039 1648478 ~ 1649618 (+) True LOC122350660
XM_043247914.1 mRNA upstream 381290 1559120 ~ 1560367 (+) True LOC122351062
XM_043247683.1 mRNA downstream 19634 1966583 ~ 1995859 (+) False ikbkb
XM_043247684.1 mRNA downstream 20708 1967657 ~ 1995859 (+) True ikbkb
XM_043246853.1 mRNA downstream 59135 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA downstream 61649 2008598 ~ 2014684 (+) False enkd1
XM_043246854.1 mRNA downstream 67910 2014859 ~ 2020034 (+) True polb
TU89150 other upstream 23286 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1089653 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1136818 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1401591 537794 ~ 540066 (+) False cdc14b
TU89212 other downstream 67931 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 83929 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 86943 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 90803 2037752 ~ 2039836 (+) False LOC122350758
TU89939 other downstream 1901665 3848614 ~ 3850557 (+) True G60788

Expression Profile