RNA id: XM_043247056.1


Basic Information

Item Value
RNA id XM_043247056.1
length 3114
RNA type mRNA
GC content 0.49
exon number 15
gene id plat
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1947141 ~ 1965053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACTTGGAAGACAGGATCGACATAAAAGTTTACCGACAAAAAGTGCTCAAGTTGCGtttgaaaagtcaaaaatactCTTAAGCTTGCGACCGAAGAGGCTAGATGACAAAATACTCGAGTTCGAGGTTTAACTTTAAAGATATAAATGCTCCTGAGACGTTTGTTTTGCTCTTAAGATTAAGGAAGTTTGCCTTCGGAAATCCACGGGTTTGAGATCGAAGAAGGTTGTAGACAGAATGCTCGTGGAATGAGGTTGTTTCCAGCCCGTGGTTTTACACGCATGTGActcagaaagagagagtgcGCACTGACTCACGAGAGCCGCTTCGCGTCGTGAATGAGGTCAAATATTAAGGATGCCAAAGACGGAAAAGGAAGGAAAAGGGAGTCTGAGGGAGAAAGAAAAGCGGGTGAGGTTTCGCAGCAGCGTCCTTCTGCAGACGCTCGGCTCGGCATCAGgagtTTAAAGAGAAGCCTTCAGGTCAACATGAATTTATTGCTAAACCTGCTGTTGCTGCTTTTTGCTCTGTGCTGTGCTGCAGATCCcaaaGTGTTCAGTATCAGACAGAAGAGAGGCACACGCACATATAGAGacgcTTGTGTGGAAGCTAATTCAGCCGCGGTCAGAGACATCGGGATGACGTGGCTGCGATGGAAGGGTCAGAAAGTTGAATTCTGCCGCTGCGCTGTTCGAGCAAGAACACGCTGTCACGAGATACCGGTGACCAaatgCTTTGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCCGTTTACTCCAATGACTTCATCTGCCAGTGTCCTCCTGGGTTTACAGGCACTCAGTGTGAAATCAGCACAACTGAGCGGTGTTCCAGGGGTCAGGGGTCGGGTTACCGTGGCACCTCGAGCATGAGTGTGTCAGGACTGGAGTGTATTAACTGGAATTCCAGCTCACTCCGAGGGAAGAAGTTCACCGCCAAGAGACCAGAGGCAAACAGTCTGGGACTGGGAAATCACAACTACTGCAGGAATCCAGACGGAGACTCTAAACCCTGGTGTTACGTTTATAAAAAGGCTCAGATCACGTGGGAGTTCTGCTCTTTACCGACCTGCGCCATCGACCCCTACCTAGAGTGCACACGGGGGTCCGGTCAGACCTACAGAGGGACGAAAGCCGTCACCCGCAGCGGTTTGAAGTGTCTGTCGTGGGATTCACCTGCAGTGTCTCGAAAGATCTACAACGCATGGAGGTCGGACGCCGGGCAGATCGGCATCGGAAGCCACAACTTCTGCAGGAACCCAGACGGTGACCTCGGCCCCTGGTGTCACGTCTATAAAGGCTCTCAGTTGACCTGGGAGCTCTGTGACGTCCCTAAGTGTCCGAGGAAAACTCCGTCAATCACCACACACGGGCCGCGGGCCCCGATAACCACCAGCAATCAAGGTTCCTGCGGTCAGCGCGTGGAAGCTCCTTCAAACTCCCTGCCGACGTTCAGGATCCGTGGAGGTCAGGTCAGCGACATCAGAGAGCAGCCGTGGCAGGCCGCCATCACCGTCTATCTGCCCCGAGCCAAATCATACAACTTCCTCTGTGGAGGCGTCCTCATCGACTCCTGCTGGATCCTCTCTGCCGCTCACTGCTTCCaggagagATTTGAGGAGAATCGTCTTCGAGTGGTTCTGGGTCGAACCTTCAGGCTTCAGAACTCCAGCAGCGAGCAGATCTTTGACGTGGAGAAATACTGGATCCACGAGCAGTACGACGACGAGACGTATGACAACGATATCGCACTGCTCAAGTTAAAGAGCGAGAGCGGTATCTGTGCCGTTCACTCTCCAGAAGTCCTTCCCGCGTGTTTACCTGAACCTAACCTGGTCTTACCGGACTGGACGGAGTGTGAGATCTCTGGTTACGGGAAAGAGGAAGAGTTTTCTCCGTTTTACTCGGAGAGAATTAAGCGAGGTCTGGTGCGCCTGTGGCCGCAGGAACAGTGTGTCCCGGAGAAGCTGGCCGGTCGTCTGGTGACCCCAAACATGCTGTGCGCCGGAGACACGCGGGGCCTGGACGACGCCTGCAAGGGGGATTCCGGCGGTCCTCTGGTGTGTCCCAAAAACGGAAGGATGACTCTGATGGGTTTGATCAGCTGGGGCGACGGCTGCGGGAAGAAAGACACGCCTGGCGTTTACACGCGGGTCACAAACTACACAAACTGGATCTCCAGCAAGATGAGAGCGAACTGAAGCACAAACGAACGGCATTCCCACAAAACGCAGCCGACGACTGGGGGAAAGGGCCGACCTCCACACCTACTGGACTCTATCTTTGGGGGTTTGAGGAGGAGACGTGGAAATACGACGAATGCTGTGAGCCGGTGATTGTAGATCATGTTGCACACGGGATGAGAAATCCGACTCCAAAGAACGCTTTTAATTCACAACACACAACGCGGCCTTCGATTTGCAAAAGGACAACATGAGAAACGCACGATAACGGGTGCTAACTCTGATGCACAAGGTCTATTAGaagtaaaattgttttttttaatgatagcGGATTTAGAGGCacttttgctttgcttttaaatagtaaagaTGTGAGCGAGCGGCTGATGGCACTTTTGAATGTTACGTGATGCTtgttaaatcataattatttttaacactaaGCATCTGCTGGGTCAGAGCGACGTTGGTTTTGGTTAGTGTTGATCTAAACGCATTCATTTGACTGTATTTAATACGACTTGTTTTTGACTGCAAATTGTCTTTAGCATCCCAGATCTAATATTATTACAGGCTTTAGATCTTGGGATGCAtattaagttaatatttaactatttaacatCTTTTATACACTTTTTGTACACATGAGCAGCTAGTgctaaattattgattttatacgGTTAACGCTTGTATGTTATTTTCGCCTGACATTTTATAAAACGTGAAATGGAAACTGTTCTTTGTCTTCTTTATGAAAGTGTTCATTGCAGATTCAGGAGATGATTATATGTTTTGTAGCGAGTGCTTTGTGAATTCACACTGTCGATTTAGTCAAACTGGATAACGGGTGAGCGATTTCAGGAAAAACTGCGAAacagttacaaaataaaagtcatttcagaga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01343 PLAT; tissue plasminogen activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89115 lncRNA downstream 97208 1849488 ~ 1849933 (-) True G60237
TU89073 lncRNA downstream 166788 1726225 ~ 1780353 (-) True G60204
TU89101 lncRNA downstream 181598 1717401 ~ 1765543 (-) True LOC122349999
XR_006251551.1 lncRNA downstream 228679 1717401 ~ 1718462 (-) False LOC122349999
TU89469 lncRNA upstream 25569 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 29131 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 29131 1991335 ~ 1994745 (-) True G60473
TU89490 lncRNA upstream 75496 2037700 ~ 2039825 (-) True G60487
TU89547 lncRNA upstream 161854 2124058 ~ 2124341 (-) True G60510
XM_043247048.1 mRNA downstream 10269 1927729 ~ 1936872 (-) True si:dkeyp-117b11.1
XM_043246946.1 mRNA downstream 20419 1880738 ~ 1926722 (-) True cltcl1
XM_043247525.1 mRNA downstream 68242 1857920 ~ 1878899 (-) True si:dkey-178e17.1
XM_043247946.1 mRNA downstream 94602 1837123 ~ 1852539 (-) True si:dkey-178e17.3
XM_043246847.1 mRNA upstream 34346 1996550 ~ 2008100 (-) False vdac3
XM_043246848.1 mRNA upstream 34346 1996550 ~ 2008098 (-) False vdac3
XM_043246849.1 mRNA upstream 34346 1996550 ~ 2008089 (-) True vdac3
XM_043246850.1 mRNA upstream 34346 1996550 ~ 2008087 (-) False vdac3
XM_043247449.1 mRNA upstream 79350 2041554 ~ 2044605 (-) True rpl6
TU89063 other downstream 160088 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 191757 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 193225 1749147 ~ 1753916 (-) True LOC122349998
TU89107 other downstream 195773 1749147 ~ 1751368 (-) False LOC122349998
TU89094 other downstream 342028 1601521 ~ 1605113 (-) False LOC122350657
TU89498 other upstream 97190 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 97190 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 498727 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 561612 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 831930 2794134 ~ 2813107 (-) False rad9b

Expression Profile