RNA id: XM_043247068.1


Basic Information

Item Value
RNA id XM_043247068.1
length 5745
RNA type mRNA
GC content 0.46
exon number 16
gene id ntrk2a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22324786 ~ 22364823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAGACTccgcaaagagagagagagagaggactgtGAGTCAGTGCACAGAAGACGCGAGAACAATTCGTTCATTtaaagattcattaaaaacgATTCATCCGCGAAGCAAACGCAGCTCTAGAGCCGTGCGTAAACCGCATCTGTCTGGCGCTGGCACGACCATAATCTGAGAAACACGCCTGTGAGGAGACCGGCCCTGGTTTACGCCGATAACCAAACCACAACATGCGAATGATCCATAATTCACGCGCCTCAAGGTCTAAAGGCTCGATGGGCGCAAGGATGCCGCCGCGCGTTGTCAATAATCAATGAAGCGTTTGAATGATCTCCTCTCCTCGTCTCCTCCCCTCGGACGCGCTGCGCATCATCCAGCGCTCGCGCTCCCTCACTCCAGCGCTCGCGCTTCCCAAGAGCGCGTCTTATCCGAGCTCAGCGGACGCGTCGTCAACGCCGGCGTCTCGGTCGTTCGCCCCTAGGCAGAGCGAGGCAAACGCGGgcgagaggaggagaggaacgCGCGCGCTTCGCGCAGACGGGAACGCGAGACAAGGTCGACGCGGGCGCGTGTGTTTTTTGCGCTCTCTCCGCGCGTTGGATCGCAGGGGTCTCAAATCTGGAGGCGAGGACCCGGGGATGAGCCTGCTGTCGGGGGGCTTCGGCATGGCGGGCTGGGGCTTCGGTCGggctctgctgctgctgctgctgctcgcGCTCTGGAGGCCCGGCGCCGCTTGTCCGGAGCTCTGCACGTGCACCGGCGCGCGGATCTCGTGCGTGGACGCGGAGCGCAGCATCGTGGCTTTTCCCATGCTGCAGTCCGAGGCAGAGATGGAGAACATCACAGACATATACATCGCAAATCAAATCAGCTTCAAATCCATTAATGAAAAAGACCTCGACTCGTATCACAACCTCAGAAACCTAACTGTAACGAACACCAGGCTGGCATACGTTTCCAGGCAGGCCTTTCAGAGCAACCCGAAACTGCAGTATCTGAACCTCAAAGAGAATATTCTGTCCAATCTATCTTGGAGGACGTTTCGTCATCTGAACATCTCGTACCTGTTGCTGGCAGGCAATCCTTTGCAGTGCATATGTGAAAACGTGTGGCTGAAGCagtggagaggagaggaggcCGAGGACCTGCTGTGTGTGGAGGAGGGAGGAAAGAGGACGGCGCTGTCTACGCTCACGCTGCCCAACTGTGTCCTCCCCACCGTGACTCTGAAGCCCACTAAAGTGACCATGAAGAAGGGGTCAAATGTGACGCTGGCGTGCAACACCTCAGGAACCCCCACACCGACTCTCAACTGGACCACCTGCAAATTAAATTCAGCAAACGAGCACGAGCGCTCAGGTCAGATGTCAGAGCTCAGGCTCGTGAACGTGTCTTCTCTGGACAACGGATGCAAAATCACCTGCGGGTCTGAGAACATGGTGGGAGAGGCTGAGGCCTCGGTGGACCTGGACATATTGTTTCCACCTGCAATCAGCAAGCTGATGGATGCGATCTCAGACCACCACTGGTGCATCCCCTTCAGCGTGTCTGGCAACCCAGAGCCTAAACTGAGCTGGTTATTAAATGGTAAACCCGTGGAGGAGGGTCCCTTCATCCGCACCATGATCCACGATTACTCAGAGGGCGAGTACCACGGGTGCTTACACCTGGACAGTCCCACACACATCAACAATGGAAAATACACGCTGCTGGCCAAGAATTTATACGGAGAGGACCACAAGGCAGTATTTGCGCATTTCATGCACGAGCCTTGGAACGACGACACTCCTCTTGGACCGCCCGAGGACAAAGTCGCTGTGTACGTGGTCGTGGGAATCGCGGCGGTCACATTCACAGGCTTCATCTTGATGCTCGTCATTCTGAAGTTTGGACGCAACTCAAAGTTTGGAATCAAAGGTCCCTCCTCAGTCATCAGTAATGACGATGACTCTGCCAGTCCTCTTCATCATGTGTCCAACGGCTCTAACACCCCCTCTTCCTCTGACATGAACGCGGACGCCGTCGTCATTGGCATGACCAAGATTCCTGTCATAGAGAACCCGCAGTACTTCCGCAGCACCAGCAGTCTGCTCAAATCTGATACATTTGTTCAACACATTAAGAGGCACAACATTGTACTGAAAAGGGAACTTGGAGAAGGAGCGTTTGGTAAAGTGTTTCTTGCTGAATGCTACAACCTGTCCACAGACCAGGAGAAGATCTTAGTGGCTGTCAAGacttTGAAAGAGGCCAGTGAGAATGCCAGGAAGGACTTTCATCGTGAGGCCGAGTTGTTGACCAATCTGCAGCATGAACACATCGTCACGTTCTACGGCGTGTGTGTGGAGAGCGACCCCCTTATTATGGTGTTTGAGTACATGAAACACGGCGACCTCAACAAGTTCCTTAGGGCTCATGGTCCTGATGCAGTCTTGATGGCTGATGGACAGGTGCAGCAGCAGGCAGAGCTCACTCAGTCTCAGATGCTGCATATTGCGCAGCAGATCGCCGCGGGCATGGTGTATCTGGCTTCCCAGCACTTTGTTCACAGAGACCTGGCCACACGAAACTGCCTAGTCGGGGAGAATCTCCTGGTAAAGATCGGAGACTTTGGAATGTCCCGAGATGTCTACAGTACGGATTACTATCGGGTTGGAGGTCATACCATGTTGCCAATTCGCTGGATGCCACCAGAAAGTATCATGTACAGGAAGTTCACCACGGAAAGTGATGTCTGGAGTTTGGGAGTGGTGCTGTGGGAGATCTTTACCTACGGGAAACAGCCCTGGTATCAGCTGTCAAATAATGAGGTGATTGAGTGCATCACCCAAGGTCGCGTCCTGCAGCGACCCCGGACCTGTCCAAAGGAGGTGTATGACTTGATGCTGGGATGCTGGCAGAGAGAACCACACTCCCGACTCAACATTAAAGAGATCCATAACCTGCTCCTCAACTTGGCCAAGGCATCACCAGTGTATCTGGACATCTTGGGATAAGAGAGCTTGTATGTGGGACTGCCCCCTCCTCTATCCCACCCAAAATCTCTTTCTTCTACAGCTTTAACATCTCCTTCCTCGTCAACCCCACCTCTTCTCAATATAAAATGGAAATGGGATCTTGTCCTTGTACAATGACTACAAATGAtgtatttctgaacaaaaaatGGATCGAATGGAAAGAGCCACATCGAAGTGACTATAGTTTTAGCTACCAAGAACCACATTTTTCACCCATCCTCAACATCTGGAGCAAGTTCACACCTGTAAATTCCAGTTTGGGAATAATGCATTGAGGACTTGAGGAAGGGCATCCCTCTTGACAACAGCAGCTCCATAAACAATGACCATTTACAAATGCAACTCTTGCCCATCAGATGATTCGGTCCTGTCGAATCCCACCCGTTTCATCCTAAATTCGATACAAAGCACAGAACCTGAAATTAGCATGGTGATCAACAGTGAGAACTGCGACAATATCTATACGTATTCATGTGTGTTTATAGAACTGGAAGTTACCAACGTAGTTTCACAGTTGAGTGACTCTAATTAAAGCTTCTGGACGCTGACAGGAAGTTGTTGCTGCGGAACTTACCTGAAATGGAGAAGTAAAATGTGTCTGGATCACAGGCATTATTTATAGTGGGACATGTCCCAACCACTTCTCCGTGGCCATTTTTTTCCTTCCATGTTTTTCCCACCACTTTATGAAATGGCTTGCAGTGGACTTCAATTGTCAAGCAAGGGTTTTCCATCTGGTAGCGATCTGGTGATTGAATAGGTTATGAAGTATGATTTTTGGACATTTCTACACATCATGTCACATTTGACTTTTGACCTGAGCAGATACTCTCCTGCTGACCCGATATTTATAAGATCACGTCCAATTATTTGTGCATAACCTTAGTAATATTCATAAGCTAAGCCTTCACCATTTTGTGACGTCACAACCAGCTCCTGTGTCCACCGCAAAACACCCATAGTTCACTATTGAGGGCTAGATGGAAACATTTGAGACGTTGCCGTGCCTCAGTACCGTCCGCTTGCATTTCTTACAGGAGCTTAATTACGCAGAGTGCCCGATTATGATGGTGCGGGCTGAATTACgacctttctttttctctttctcgttCGCGATGTTTTACTACTGAGTGGACGCACTAATGTAGTACTCAAGCTTCGGGTTGTACAACTGCTatagtgtaatatatatttcattacagGACAAATGTCTCCTATTAGCAGCAACTCCCTGTAGACTCATATGCGCTATAAGTGGGGAAAAGAGGAGAGACGGGAGGGGACAGGATGGATAGAATGAGACGAGGGgtggaaaataatgttaaatagaGATAAACATGAGTCACCTCACTAAAACCCACATTTCGTCTTCCTTTTATCGTACATAAATGATTATATCTATTTATCACTATAGAGATCCTATCCCAGCATCCTTTTCGTTTGCGTTCATTATTGCACCGTCAGTCCCTTCTTCCATCGGAGACTTTGCACAGTACACTCAATACCGTATCTTCAGTTATGAGTcccaaaaatcatttaagtttggaggtaatttatttacttatttttcggaataagaaatgtaatttttaatatatgtaactgtaatattttatttattttttacttaatgtgaagcatttttgtttttgcctgtaaatggttttatttaaaaaaaatattcttagtattatatttttttcatacttgGTTGGGAGTGCATATAGAGGTGGTTTCTGGGTTGATGGATTGGGAtgtgttaatgaaaaaaaaaaagattacatatTCTGGGTAAACGACGAGAAAACTCCAGGTTAGATGTTCAGGTTACATTCACAAAAGAAGCCTACAAAAAAGAAGTCTAATTCTGAATTATGGCAGTTTTTCATGATCATTATGAACATTTTCCCCACACACCTTTAgcaatgtattttcattattctCAATGGtaattctcattactgtaatacagTCATTTTTACTGTAGAACAACGTTTCTATTTAAATTTGCATAATTGCacattattttatcatatgaatgtcattattttttttttattacagtgatagctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagcaatggggtaaaatgtgcttaattgtcatgaattaatttgtttttcagtgttttcaacaGTGTTTTAGATACAAATATGAGTTTCAATGTTTCAGATTAGTCTTGCCTTACACAAACATCTCCGGTTGTCCTGCGACAGAACAATAAACTGTGATATCAAACACCTTCCTCTACATGTACAGAACTTCTTCTGATGTTTCAGAATGTCTATAAGCTAAACTACCTTAAACAAGTATTAAAGTCAGCGTGAAAGTAAAACCGACCCTCTTTACTTTCTTAGACTTTCCTGTTTTATGCACATTATTACACGCGTACAAGTCATTGTGGAACTTGCCTCTTCTGCTGGCATCGCCGGTCACCAACTGACATCGGTAAAATGGcttttcatgttgactttaagccTAGTGACAACAGAAAGAAGATTTCTGCACAGTACCAAGTAGTGTGATCATTTCATTTATGGAATTGTGTTATGCGTTCAGCTACAAAAGTACAATCAGATGTCCTCGTCTGTATGAGATATATGGACCAGTCAAGTTGTCCGccattgtatttaataaaagtgtaatgtCTTACCTcataatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97817 lncRNA downstream 28833 22293439 ~ 22295953 (-) True G66131
XR_006251666.1 lncRNA downstream 250315 22073687 ~ 22074471 (-) True LOC122350974
TU97806 lncRNA downstream 256029 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA downstream 256029 22064898 ~ 22068757 (-) False LOC122350973
TU97789 lncRNA downstream 311108 22010643 ~ 22013678 (-) True G66115
TU97838 lncRNA upstream 78 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 453 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 12087 22376910 ~ 22378639 (-) True G66147
TU97871 lncRNA upstream 21259 22386082 ~ 22387783 (-) True G66163
TU97872 lncRNA upstream 21259 22386082 ~ 22386883 (-) False G66163
XM_043246626.1 mRNA downstream 33939 22283349 ~ 22290847 (-) True naa35
XM_043247911.1 mRNA downstream 58925 22243202 ~ 22265861 (-) True gfpt1
XM_043245990.1 mRNA downstream 163228 22159986 ~ 22161558 (-) True LOC122349876
XM_043246010.1 mRNA downstream 177789 22145523 ~ 22146997 (-) True LOC122349886
XM_043246221.1 mRNA downstream 214699 22075010 ~ 22110087 (-) True antxr1a
XM_043247981.1 mRNA upstream 1577 22366400 ~ 22370617 (-) False rmi1
XM_043247983.1 mRNA upstream 1577 22366400 ~ 22370614 (-) False rmi1
XM_043247982.1 mRNA upstream 1577 22366400 ~ 22370614 (-) True rmi1
XM_043247396.1 mRNA upstream 73647 22438470 ~ 22457269 (-) True rasef
XM_043246063.1 mRNA upstream 147129 22511952 ~ 22515035 (-) True LOC122349924
TU97793 other downstream 58971 22261239 ~ 22265815 (-) False gfpt1
TU97794 other downstream 58971 22261385 ~ 22265815 (-) False gfpt1
TU97809 other downstream 226978 22079451 ~ 22097808 (-) False antxr1a
TU97810 other downstream 228724 22082021 ~ 22096062 (-) False antxr1a
TU97805 other downstream 256029 22064898 ~ 22068757 (-) False LOC122350973
XR_006251538.1 other upstream 272452 22637275 ~ 22640307 (-) True LOC122349902
TU98109 other upstream 430799 22795622 ~ 22796362 (-) True G66310
TU98104 other upstream 469864 22834687 ~ 22835591 (-) False ddx51
TU98264 other upstream 1212130 23576953 ~ 23583368 (-) True G66410
TU98323 other upstream 1293242 23658065 ~ 23663536 (-) True G66451

Expression Profile