RNA id: XM_043247097.1


Basic Information

Item Value
RNA id XM_043247097.1
length 1569
RNA type mRNA
GC content 0.51
exon number 8
gene id gpd1a
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3704865 ~ 3711035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGTGGCTTCGCGGACAAAACACTGAAGCGTGCGCTCACGCGGAGGTTTGATTGACAGATCACAGAGACGAAGGATACGATCCTCAGCGCAATGTCAAGTCCAAAAAGAGTTTGCATCGTCGGCTCTGGGAActgGGGTTCTGCTATTGCTAAAATAGTTGGCACAAATGCAAGGAATAATTCAAAGTTTGACTCCACGGTTAATATGTGGGTGTTTGAGGAGACGGTGAACGGACGTAAACTCACGGAGATCATAAACACAGACCACGAGAACGTCAAGTATTTGCCTGGACACAAGCTTCCGGAGAATGTTGTGGCGGTGCCAGATCTGCTCGACGCCGCCAAGAACGCTGATATACTGCTCTTCGTGATTCCACATCAGTTCATCGGCCGCGTCTGTGACACCATGAAGGGCCGAATCAAAGCGGACGCGCTGGGAATGTCGCTCATCAAGGGGGTGGACGAAGGCCCGGACGGGCTGAAGCTGATCTCGGAGGTTATTCGTGAGAAGCTGGGCATCGAGATGAGCGTCTTGATGGGGGCGAATATCGCCAATGAAGTGGCGGATGAGAAGTTCTGTGAAACCACCATTGGCTGCGGGGATCAAGCTCAAGGGGCCTTGCTCAAGGAGCTCATGCAGACGCATCACTTCCGGGTCACCGTCGTACAGGAAGCAGACGTCGTCGAGATTTGTGGCGCTCTGAAGAACATAGTGGCCGTAGGAGCGGGTTTCTGTGACGGGTTGGGATTCGGTGATAATACGAAGGCCGCGGTGATCAGACTGGGCCTCATGGAGATGATCAGCTTTGCCCGGTTGTTCTGCACCTCCGGATCCGTCTCTCCTGCAACTTTCTTGGAGAGCTGTGGCGTCGCTGATCTCATTACTACATGCTACGGGGGACGCAACCGGAAAGTTGCAGAGGCTTTCGCCAAGACTGGCAAGTCTCTTGAAGAGCTTGAGAAGGAAATGTTGAATGGTCAGAAGCTACAGGGTCCAGCCACGGCGGCTGAAGTTCACACCATACTTCAAAACAAAGGTGTACTGGACAGATTTCCTCTTTTCAACGCCGTGTACGGGATCTGTTACGAGGGCCGGCCTGTTACCGAGTTCATCCACTGCCTCCAGAATCACCCAGAGCATCAGTGAAAGGAGAACAAAGCTGCAatatgagtgtttgtgtgtctgtgagccCTGCTGAACGGAAAGGCGCCGCTTCTGTTAGAAAAACCTCTTAAACACCAGCTTGACCTTCGTCAGACAGAAGCGTGTATAGTGTTCTGAGCTGGTCTGTTCAGCGGTGTGTGTTACATTAAGTGACCAAAGTCAGACGAggacgctctctctctcaggttttGTCATAGCTGCtgctcatttttaatgaatccgTCCCGCAGCTGTGTACTTTCAGCCACTTTATTCTGCAGAAAAGCCTCAAATGTCAGACTTAGCGCTCCTCTTTAAGTGCCACTGAAGCGGTTGCCGTCCATTCAGAGTGAAACGGTTCTCAAAGTCACACTGAAATGAATGTCCTCAATGcgtaaagtgaaataaatgactTATATGCGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89876 lncRNA upstream 48933 3654761 ~ 3655932 (+) True G60743
XR_006251656.1 lncRNA upstream 96888 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA upstream 96888 3607315 ~ 3607977 (+) False LOC122350949
TU89854 lncRNA upstream 124883 3579502 ~ 3579982 (+) True G60728
TU89844 lncRNA upstream 134581 3569494 ~ 3570284 (+) True G60718
TU89925 lncRNA downstream 113867 3824902 ~ 3826416 (+) True G60782
TU89958 lncRNA downstream 173847 3884882 ~ 3885873 (+) True G60803
TU90082 lncRNA downstream 196677 3907712 ~ 3908800 (+) True G60870
TU90154 lncRNA downstream 429574 4140609 ~ 4215206 (+) True G60895
TU90322 lncRNA downstream 590637 4301672 ~ 4342107 (+) True G61007
XM_043247091.1 mRNA upstream 1141 3681533 ~ 3703724 (+) True asic1a
XM_043247089.1 mRNA upstream 52798 3648002 ~ 3652067 (+) True nefmb
XM_043247345.1 mRNA upstream 128315 3575531 ~ 3576550 (+) True LOC122350663
XM_043247890.1 mRNA upstream 135948 3555598 ~ 3568917 (+) True vsig8b
XM_043247953.1 mRNA upstream 178921 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247098.1 mRNA downstream 15535 3726570 ~ 3737104 (+) True abtb1
XM_043246378.1 mRNA downstream 32450 3743485 ~ 3765088 (+) True slc6a6a
XM_043247795.1 mRNA downstream 89243 3800278 ~ 3807847 (+) False LOC122350989
XM_043247794.1 mRNA downstream 89344 3800379 ~ 3807847 (+) False LOC122350989
XM_043247796.1 mRNA downstream 89693 3800728 ~ 3807847 (+) True LOC122350989
TU89218 other upstream 1665029 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1668885 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1671802 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1687345 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1786494 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 137579 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 213826 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 337584 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1393535 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1393535 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile