RNA id: XM_043247107.1


Basic Information

Item Value
RNA id XM_043247107.1
length 3331
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC122350540
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20284244 ~ 20304949 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCATTCAAAGTTgaagttatttttgctttagatATTCCCCCCCTAAACCTTTctgtgacttactttcttctgtggaaggGAAAATAAGATATCTAACAAAATTAACTTTCCCCATTAACTTTCAGTGTAACTTTCAGTTTTTCAGAGAAGAAATAAAGCCATGATGGTGGacttttttgagtgaactatacctgtaaataaagaattttacaaatttaaattgatggcaaacaataaaatgaagttgatttgtgttgttttagctcggtttaattaatgtttttagtaaTGGGATAGTGTATTAAAGTACTTTTAGTTCTGTACTTGTGCTTTTGTGCTATTATGCTAATTGCACAAATTTTTATAAGACTGTCAGGATTTGTACTTGCACTTGACATAGTTCCTGGTTAAATGGGGGAAGGGAGTCACAGTCGTCTGTCACGCTATCCGTCAGTGCTGACTGCAGggatgtaatgtgttttatcatCCCTCTCCATCTCCATCACATCCCTCCCCCatccttctctttctccatccatccgtctCTCTTTATCCATCCTCTCTATCCATTTATCTGCCCTCCCCCCTGCTGTCTTGTCTTTCGCTATGTCTACATCAGAGTCTGTATCTCCTTCTCTTCTCACTCCCTTCCCAAAGTAAACATGGTTTGCTCTTCGTCGTGCATTCTCCGAAAACCGTATCGGTTAacctcttaaaggaatagttcacccaaaaatgaaaatgaccccatattttactcaccccaaagccgTCCTAGGTttaaatgactttcttctttcccaCAAACAGTTTTTAGGAAACTTTTCATGGtttttccaagcttggtaatgcttgtggatagcggtaaatcggatatatccgTGGTGAAACTAACCTAGTACAGTGAGCAAGAATTTTCTCATTAATAATGCGGGCAGAGCCTTTTAGTAATGAACCGTCGCTCTGAGACCCTCAATGTTATTGCACCCatgcttcaaaaacacaaatcaatcatGGCCTTTGTAATTCGAAAATCACACCAAAGCAATATTGCAATTCGTTCATAATGCTGGTATATCATGCTGCCCTAGActgaactgtgtttgtgtgtgtgtgtgtgtgtgtcagtgaaaCACAAATTTAGCTGAAGGCTGATTTAGCTGATTTCCTGTGACCAAGAATTTGAAAAACCCTACTCTAAACAATATAAAGACATTTCTCTGGTCTTGAGAGGTTAAAGATATTCATAAATTGGTTTGAAGCAGATAGTTAGACGTCATAAGAGATTCTTAAGAGATGGTATTTTTGATATTCCTTTCCCATGAGTTTCTTTGACTATatattgatattgttttttttcctttgccaAATCCTGAATGAGCCTAACCTGACACCTACCATACTGTACAACTGAGACCACTGATTAACCACAGAAATCCATTCAGTCCAGACCAAGGGGAGTGTTTGTgggtttatttatgtTTACCTCGTAGGGAGCACccctttttattcaaaatgatgATTCATAAGCAGTCGGCTCGTACCTCCCCGGGCAGTGTTTGCTCTCTACGTGGAGGAGGTGTTCCTGGATCCCCGGCGGTCACTATAGTGGCCAAAATGGACAATCAAGTGATTGGATATAAGGATCTAGCAGCTATACCTAAAGACAAGGCCATTCTGGATATAGAGAGGCCTGACCTGATGATGTATGAACCCCACTTCAGCTATTCACCGATGGAGAGGTCATTATCTCCTCGTTCAATCTCCCCTCCTCCATCTCCAGAGAACAGTCTATCAAAGGATGTCTATCAGAGGGATTGGTCAGAGCCCAAGTCGTCAGGCAGCTCGTCTCCAGCGTCCACACAGCTGAGTAAGAGCATCACCGTCAGCACAAAAGTCCTACACCAGCAGCAGCACTTCCACAGGCCAGACAATGGAACCAACATATACAAGAAGCCACCGATATATAAACAAGATGTCTCAGCAGCCGTTCCACTCGGTAAACACATGGAGGATTTAATCATCGAGTCTTCAAAGTTTCCCGCCGCACAGCCTCCAGACCCCAACCAGCCTTCTAAGATAGAGACGGACTACTGGCCCTGCCCACCCTCGCTAGCTGTCATCGAGAAGGAGCGGAAGAAGAGCGTGGCGCCCAAGGAGGCCGAGGGAGAGGAGAGCGAGGAGGATGATAAGTATGATGACAGCGATCTGTCTGATGACATGTGGAGACTTCGGCAAATGCAGAAACAAGAGCTCAACAAGATTCAATCCAATCTAGGAAAACTGATACTAAAGGAGGAGATCGAAAGTTCGGCCCCCGTCCGAAGGAAAACACGGTCTCTGCCCGACAGGACACACATGCATCTGGGTACatttcaaaCCTCCAAATCCCCCTCGTTTCCTTCCTACACTAAGACTGGCCTGACTaggTCTGGTGTTTGTGTGCAACAGCTCCAGTCTGCAGAGTTCTCCTCTTCAAACAGTGATAAAGGGAGTCAAAATTTTCAGAACGGAGATGCCCAGAGCAGAAGAATAGACCGAGGGAACTCACTCCCTAGTATGCTGGAACAAAAGATTTACCCGTATGAGATGCTCATGGTGACCCACAGAGGCAGAAGCAAACTCCCTCCCGGTGTAGACAGGACCAGACTGGAGaggCACCTGGCGCCCGAGGAATTCCAGAATGTCTTCGGCATGTCCATAGAGGAATTCGACCGGCTCTCCCTCTGGAAGCGGAACGACATGAAAAAGAAAGTCTCTCTCTTCTAGTAGTCAGAGAAACACGTTCTTCTACAAACACTGTCACTGTCAGTCCGCACTTCCGCTTGTAAGAACAGTACAGGCGGTACAAGTTAAGGAAAGATGAGGAATGTGAAATGAGGAATGTGATTACGGagccagcaaaaaaaaaaatcagttatcCTTATCCTTCGATAAGCCCCGTATCTGATTGCAGCTAACAATCATATCCGAGTCTTTGATGTTGTCTCTTTTTCTAGTCGCAGCTACTATGTCAGGACTTCACCGAGGTTACCAGGTCCTCTTCTGTGTGTGCTTAGTAAAGCTATAATGATACGCACAGATAATAACGCTACAGATACACATATTTGAGCAGACCAAACCCCTGCAGAACAGTTCAGAGGACCAGCAGGAATCTGTGAGTTTAAGTCACTGCCACACTTTTAAGCCTTTTGCGTGCTAAGCATGAATTAACAAACCTTCGGAATATGGGTCAATGActgttttggttttgatttaatagtttgttaaaaaaaagatttaaaagtggaaaaaagtGGAAGGAGTTTAATAAACCTCTTCCACGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96764 lncRNA upstream 91929 20182414 ~ 20203582 (+) True G65446
TU96765 lncRNA upstream 91929 20191199 ~ 20203582 (+) False G65446
TU96758 lncRNA upstream 156147 20135252 ~ 20139364 (+) True timm17b
TU96748 lncRNA upstream 166691 20127983 ~ 20128820 (+) True G65436
TU96740 lncRNA upstream 195159 20100028 ~ 20100352 (+) True G65429
TU96850 lncRNA downstream 113160 20418109 ~ 20455290 (+) True G65497
TU96857 lncRNA downstream 135860 20440809 ~ 20441900 (+) True G65504
TU96848 lncRNA downstream 152290 20457239 ~ 20459236 (+) True G65496
TU96845 lncRNA downstream 155184 20460133 ~ 20461465 (+) True G65494
TU96859 lncRNA downstream 159809 20464758 ~ 20465113 (+) True G65506
XM_043247117.1 mRNA upstream 11683 20279236 ~ 20283828 (+) True rsph14
XM_043247118.1 mRNA upstream 11683 20279236 ~ 20283828 (+) False rsph14
XM_043247119.1 mRNA upstream 11683 20279236 ~ 20283828 (+) False rsph14
XM_043247183.1 mRNA upstream 16430 20276974 ~ 20279081 (+) True LOC122350573
XM_043247181.1 mRNA upstream 18673 20269483 ~ 20276838 (+) True bag4
XM_043247961.1 mRNA downstream 3958 20308907 ~ 20342942 (+) False si:dkey-220o5.5
XM_043247960.1 mRNA downstream 3960 20308909 ~ 20342942 (+) True si:dkey-220o5.5
XM_043247570.1 mRNA downstream 39485 20344434 ~ 20351986 (+) True fhip2b
XM_043247569.1 mRNA downstream 55552 20360501 ~ 20389256 (+) False adam9
XM_043247568.1 mRNA downstream 55561 20360510 ~ 20389256 (+) True adam9
TU96674 other upstream 261904 20030057 ~ 20033607 (+) False rfk
TU96285 other upstream 1021769 19272101 ~ 19273742 (+) True pqbp1
TU96288 other upstream 1143206 19119944 ~ 19152305 (+) True G65105
TU96270 other upstream 1199440 19094947 ~ 19096071 (+) True G65100
TU95945 other upstream 1871717 18418965 ~ 18423794 (+) False sb:cb288
TU96852 other downstream 124070 20429019 ~ 20431387 (+) False LOC122350816
XR_006251701.1 other downstream 173243 20478192 ~ 20478298 (+) True LOC122351139
XR_006251702.1 other downstream 176337 20481286 ~ 20481392 (+) True LOC122351140
XR_006251544.1 other downstream 897499 21202448 ~ 21204346 (+) False ankrd39
XR_006251543.1 other downstream 897532 21202481 ~ 21204346 (+) False ankrd39

Expression Profile