RNA id: XM_043247240.1


Basic Information

Item Value
RNA id XM_043247240.1
length 6090
RNA type mRNA
GC content 0.43
exon number 11
gene id slc20a2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14225356 ~ 14259044 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCAACATGTCTGACTTTCATCTGGCAATTCCTTATACTACATTTTACAGAACGTTGTGATCTTTTCTTTGTCCGAATCCATTCACCCGTCTCATAGCTCCTTTCTCGCTGTCATAAGTCAGCGCGTCAGCTGGGCATTTTCCCATCATTTCATTCACAATCCCTCACGTTTAATCTATCCATCTCCCATTTTTCCAATTATTTTCCGAGCCCACTTTACAAAAAAGAGGGAAAACTGAGCACTGCATAGCCCGAAGCTGAAGGCGTCTTTGTGGACAGGACACTTAGAGGGCCAAACAATGGAATGCTCTCTCCTGCCTACACTGCTCAGCACTCTACAGACTGAGGTTAAACGGCTTAGTTAGCAGTGTGCCTCTCCCCCAAGAACTCTTTTAGCCTGGGGAAagttgggagaaaaaaaaaaacgggcgAAGGAGAATTTCCTTCATAGTACAGCACCTTACTCCAGTTCTTTGTAGTTGCTTGCTTGGGATTCATTTGGAAGCTTTGCGTGAACAAAAGCCAAGATGGATTTGGAATCGTACTTGTGGATGGTCGTGCTGGGCTTCATTATAGCCTTCATCCTGGCATTTTCAGTGGGGGCAAATGACGTTGCAAACTCGTTTGGCACGGCGGTCGGGTCAGGGGTGGTGACACTACGGCAGGCCTGCATCCTGGCTTCCATATTTGAGACCCTTGGATCCATGCTCCTCGGTGCCAAGGTCGGGGAAACCATTCGGAAGGGAATTATAGATGTCAGTTTATACAACGAGACGGTGCCGATACTGATGGCGGGAGAGGTCAGCGCCATGGTCGGGTCTGCGGTTTGGCAGCTCATTGCCTCTTTTCTGAAGTTGCCCATTTCTGGAActcattgcattgtgggatctACTATTGGCTTCTCTATGGTTGCTATTGGCACAAAAGGAGTGCAGTGGATGCAGTTAGTCAAAATTGTTGCCTCATGGTTCATCTCCCCTCTGCTGTCTGGTCTCATGTCTGGTCTGCTTTTCTTCATCATCAGATATTTCATTCTTAACAAGGATGACCCTGTTCCTAATGGTCTCCGTGCTTTGCCCCTCTTCTATGCGTCAACCATCGGAATCAACACATTCTCCATCATGTACACTGGAGCTCCCTtaCTGGGCTTGGAGATGCTCCCCGTCTGGGCTATTGCCCTCATTACCTTGGCTGGTGCTCTGGTATGTGCCGGTCTGGTCTGGATTTTTGTTTGCCCCTGGATGAGAAGGAAAATAGCAAGTCGACTGAAGAAAGAGCATGCTCTTTCCCGCATTTCTGACGAAAGTTTGGATAAAATCccagaggaagaagaggaagccCCCGTGTTTAAAGAGCTTCCAGGTGCAAAAAGCAGCAATGATGCTGTCCTGCCCCTGACAGAGGAGTCCACAGGAGAGCTGAACAGCCTGGCTAATGGAGGCACCGTCCTGCCCAACGGCAGGGTTTATGGTCGCACTAACTCCATGACCAACGGCTGCCTCAAGTCACCTGTGTCCAACGGGGGCTTCAGCTTTGACGGACACATGCGAAGCGACGGCCAGGTCTATCACACCGTTCACAAGGATTCTGGTCTCTACAAGGACCTCCTACACAAGATCCACCTGGGCCGCCTGGAAGACGAGCGCAGCGGCTCGCGTCCCGACAACAGCTACCGTCACCTCCGCCGTAATAACAGCTATACCTGTTACACAGCAGCCATCTGCGGCATGCCGGTGCAGCCCCTGATGCGGTCGGAGTCCAGCGCCCCTCCTCCAGAGGACAGCGAGAAGCTAGTGGGTGACACGGTCTTCTATTCGAAGAAGCGATTGCGCTATGACAGCTATTCCAGCTACTGTAACGCGGTCGCGGAGGCTGAGATCGAAGCGGAGGAAGGTGACGTGGATGTGAAGTTGGCAGCCGATAAAAGGGAGCCCCGGGCCCCTGCTGAAGCGGTGCTGGAGGACTGTGTCGACGAGGACAAGGAGGAGAAGGACAAGTCACAAGTCTTCCTGCTCTTCCACTTCCTGCAAATCCTCACCGCCTGTTTCGGATCGTTTGCGCACGGTGGGAATGATGTCAGTAATGCAATTGGTCCACTGGTGGCCCTGTGGATGATTTACGACCAGGGTGGGGTGATGCAGGATGCGGCCACACCGGTCTGGCTTCTGTTCTATGGCGGCATGGGAATCTGTGCAGGACTGTGGGTCTGGGGTCGACGGGTCATTCAAACAATGGGCAAAGACCTCACTCCCATCACCCCCTCCAGTGGATTCACTATTGAGCTGGCCTCAGCGGTCACTGTTGTTTTGGCATCCAATATCGGACTTCCAATCAGTACGACACACTGCAAGGTGGGCTCAGTGGTGGCGGTGGGCTGGATCCGCTCCAGGAAGGCTGTAGACTGGCGGCTCTTCCGGAACATCTTCCTGGCCTGGTTTGTGACCGTCCCTGTAGCGGGCCTCTTCAGCGCTGCTGTCATGGCCCTGTTCGTCTACGGCATACTGCCTTACGTTTGAGTTGGAAAATGGGGAAGAGAGGGAGGTATAGGAAGGtaatgatgaaaaaataaaaccgagacacagacagaaaaaaaaaaatcaagatataAGGGGACAGCCAGAGGGTGGGGGAGAGTCTTCAAATGCTGcctggaaaagcatccagaatcCTTTGACTTAAATATCCTTAATCTTGTCAAGAGTATTTATTTccgtttcatttttgaaaattgttttgttgaaatgttaCCATAAGCCGTAAATCTTTGACTCGTGATTTCAAACGGTACATTTTCAAAGTTCCAGAAAATAGCTCTCTTACATTTGTGGTTCTACATGTTCAAGGGAGTAAACGGATGGAGGACAATGGCCAatatcgcaaaaaaaaaaaaataaaaaatcagtaCATGAAGAATGGGACTAGAAAATCGGTTTTATGGCACAATTCACAGTATATTGGCACAAAATATAGCTACTAACTACTCTTGGGCctctaaatgtaatgttttcaaatgtatcATGTGTGGTGAAATCGCACCTTTATTCCCATTCGCTAAGAAAATGACACTGAGAAGCATCctgctgttcaaaacctacattaGCTGCATTGCTAAAATCATACCTCAGTCAACCCTCTATGCCACATAAAAGACAAGTGACGAAACTGTGCTATCTCATTatacatgaaatattataagataaaatcattttttttgtagtggTTAATGTGCAAGAATTCCCTGttcttttattgttgtatttatttttagatatgttACCGTtcatacctttttttaaaaaaacacaaggtgTGAAGACTAAATCATATTTTGAACTATGTATGCTACTATAATTTCTACTGTGTATATATTCAGCTAtggattttagatttttagttttgtcttaTTTGGAGGTcttatattgttacattttaaggaGACTTTAGACCAGGTTTGGTAGTTGCATGAATGTATGCTTTCCaagcatatgaaaaaaaaaatattattttgctacGACAAGACGCTACATCCATAACCCCGTCAGAGTATATCAAAAATAATTCTCCCATCGCCTACCCTAAATGATCCTCATATCAGTGAAAACTAAAACATTCACCAAGGAGTCATATCTGaggtattacattttaaacttgcATATCAATAGGTGATTTTTAcccatttgatttatttttttaatttttgaaagaTTAATATCCAAAGATTGTGATGATCATGTTTAATTGCCGTACTCTTTGacagtgtttgtatttacaatCCAAACAATTTCTAAACTAAAGTAATCAGTTTGACTCTGTATTGTGGATCGTATATAAAGAATGCTAGTTGTTCGGTCtagcaataatatatatatatatatatatgttcttaGAGCCCAACGGATGATGCCAATATAAATACCTGTATGTGCCGGAAAAGCCAAAATCACTTAAGGTGAACCCATAAaaccagcacaaacacacacagatttaccCACGTGACACACAAGATGTATTGAGAGGCAGTGTTAGACGCCAGGCCTGGCTATCGGTCAGTCTCAGTCATCCAGATACTTGATTCCGCCTCACTGACAAGCCTTCGGTACTGATATCACATCGAGCTTTATCTGAAGAGTTAGCTTAACATCAGGTCGCTATGTGATTCAACGGCACAGATGCGCCATATATCAAAAAGGTCGAGACGTAACAACCCATTTGTGGCCCTGACTCTACAAGAAACCAAAAAGCCTCATGATTTCAGTCCAAACTGGCCAGGCTCACATCAAATGACTGTGTGATATCAGGTGAACTGGGCTTAGATGTTTGTCAGACGCCGTTGTAATCTGCCTCTGGATAGTCGCCAGATTTGGAAACCGTACAAACGCGTGGCTTCGAACCAATGCAAAGTGttgctgtttctttctctttctttttttttgtgtattacttttatttttatttttcatcaagaACAAATCTATGCTTATATGGCCATTTGCCTTGTAATGTTGTGCTTTACTGTTTGTTGGATACAGTAACTTCAGTACTGTGGTGTTTACATTGTAATCATATTGTAGAATAACTCATTGCAGTTGCCTAAAAATGCCAATCAACTAACTATTAATcaacaattaaatatgaaataaccaGGCATAGTGCAAAGGTGTTTCatgtcattttgtgttttggcAGTGTGAACCACGATGATCTTGTTACATCACACTGCTATATGTAGTACACAACTTTACATGGTggatatgattaaaataataataataataataaaagaaattaatagatataaatttcattaaactatatttttctACATAAGTTCTACCTGGGTGGTGACTTCTCACATGGAGAGTAAACTGGGCTCCTGAGCAACAATTATATTGAAATACCGGTAACTATAATAAGAAAATTCAGTGCTGAATACCACTGAACGATTTCTTAAAGGTGGTTATATGGCAAAAGTGTCTAAAAAGTTCAGGCAGGAGGATCATAATGTGGATCGGTTCCATAtatccattgtttttttttttccctgcccAGGGACGTCTCTCCCTTGTGTGAGAGTGAGCGGTTGTGAGTTGTTAAAatttcatgattattttttgaaaagtaAGGCTGAATAactttgtaattttgtttcCCTGAATTGCAATATTGAGCTGCCAGAGCGAGGTTGATTTGAACCTCCACCAGCAGTGGCGATAACACCGTTTTGAGTCAGACAGGGGCACAGCAAGATTCAGTAAAACTTTCTACTAACCCGCATCCGATCATTTGCATATTCGCTATGACTTGGTTTGGTTTTTAACGACACGCCAGCAAAATCCTCCACAtgcgcaataaaaaaaaacattcttcacACAAGTTCTCGCGCTAACCTGAGCACTCGGAGAacgattaatatatatatatttttaaaatggaactGACTTTAGTTGTGTGACGCAACAacgcatttattttaatgtacgGTATTGTGACGTTGTAGCACCCCTCGTGGAAATACTGAGAGTTGCGATTCATTTCCGAGTCACGTCCGCGTTCAGGAATTTGCGTAAACAAACGAGGCTGCAGTAGTTTGGCCGCAGAGTTAGTCTTGAGTTACAAGTTCAGAGGTTGGCATGCGAACCGGCGCTACACCAAATCACGTCACGTTACGATTGGACGAATCTAAAGAGATCACTACGTAAAACTGGCAGAAACAAAATCGGCCGTATCCTCTACCAGTGTGTTGATAAAAGGTTTCGTAACCGTTCTTGGCAGCGTAGTGGCATTCTCCCGTAGTGTGctaatatcatttattaagtTTCCATGTTCTTATCTGCACTTGAAAATAGAATGTAGCCCAATCCTCTGCTGGCCTGCTGATTGCCTGCTGTGTGTCGTCTCTATTGCCATGATGTGAATGCTATGCTGTTAACTGTCTGGTAACATCTTAAGACAGGGCTTTTAACAAACCCCCCCCATATCTGCATATGTGCTGTATTgctgtttcctttctttttggaactttttttgtgaaagttGTCTGCATTTTAACCAATTAAATTATGGgaattaaaattacaaagaaTAACAA

Function

GO:

id name namespace
GO:0006817 phosphate ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG:

id description
K14640 SLC20A, PIT; solute carrier family 20 (sodium-dependent phosphate transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94683 lncRNA downstream 21435 14203642 ~ 14203921 (-) True G63976
TU94682 lncRNA downstream 22086 14203046 ~ 14203270 (-) True G63975
TU94662 lncRNA downstream 87933 14131391 ~ 14137423 (-) True G63955
TU94663 lncRNA downstream 96934 14128189 ~ 14128422 (-) True G63956
TU94670 lncRNA downstream 107354 14117730 ~ 14118002 (-) True G63963
TU94689 lncRNA upstream 17797 14265172 ~ 14265635 (-) True G63979
TU94690 lncRNA upstream 18351 14265726 ~ 14266043 (-) True G63980
TU94694 lncRNA upstream 21229 14268604 ~ 14269763 (-) True G63981
TU94714 lncRNA upstream 50916 14298291 ~ 14298590 (-) True G63997
TU94902 lncRNA upstream 138229 14385604 ~ 14422900 (-) False LOC122350784
XM_043246031.1 mRNA downstream 30855 14193833 ~ 14194501 (-) True LOC122349900
XM_043246690.1 mRNA downstream 35112 14187429 ~ 14190244 (-) True mpeg1.1
XM_043246693.1 mRNA downstream 39215 14181532 ~ 14186141 (-) True LOC122350320
XM_043246692.1 mRNA downstream 39217 14181532 ~ 14186139 (-) False LOC122350320
XM_043246691.1 mRNA downstream 49533 14173054 ~ 14175823 (-) True LOC122350319
XM_043247806.1 mRNA upstream 26161 14273536 ~ 14285846 (-) True ercc6l2
XM_043247496.1 mRNA upstream 138225 14385600 ~ 14455243 (-) True LOC122350784
XM_043246722.1 mRNA upstream 208052 14455427 ~ 14493418 (-) True dock8
XM_043246723.1 mRNA upstream 208052 14455427 ~ 14485235 (-) False dock8
XM_043246687.1 mRNA upstream 373281 14620656 ~ 14625056 (-) True gucd1
TU94636 other downstream 362106 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 1862261 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1960823 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2428154 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2446105 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 476833 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 532156 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1036486 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1401851 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 1409544 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile