RNA id: XM_043247249.1


Basic Information

Item Value
RNA id XM_043247249.1
length 2459
RNA type mRNA
GC content 0.59
exon number 11
gene id dtx1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1494505 ~ 1523464 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcgcgcgcacacaagCAACAGTCAGGCGGCGGAGGATGCGCACAACATGAGCAACAGCCAATAGAGCTCATAGAGAGAAGAACACGGTGAATTCCGACTCGTTTAGCGTCGGGAATGCGATCTAGAAACACTCGGCTTGTTCAGATATTCTGGGCTGGATCAGATCTCCGGTTCATCGCTTCACATCACAGAAACTGACAGTCCCGTCCAAGAGCAGCACGTTCTCTTTGGACTGGATCTAGACCTCGGGACGGCAGGATTGGACTCCGATTGTCTGTTTTGGATTATTCTGCTGAGGAGGAGTCACTTCGGAGAGCATGATTACTTCCAGAGCCGGAATACTAGAGACTAATCTAGTTTATGTGGGCAAACTCGATTACAGCGGCGAATCCCTCATGTGAACAGAGCAGAGTCTAATTCGTTTTGCTGCAGGACGTGCATTGACTTCAGCGGTGTTTAAGCAGAATCAAGAGTTTGGGATCTTCGCAATGCGTTTTCTGTAGGAGCGTTCTCTTGGAACGTTGGGTATCCTGGGACGGCATCCGTGGCGTTCGGTGTTGGCGTGGAGCTGAATCGAATGGCTCGACCCGGCTCTGGGGTTCTGGTGTCGCTGGGAGGCGGATACTCGTCTCAGAGCATGGCTAGGGTGGTGGTTTGGGAATGGCTGAACGAACACGGCCGCTGGAGGCCATACGGCGCCGCCGTCTGTCATCACATCGAAAACGTCCTGAAGGGGGACGCTCGGGGGACCGTCATACTGGGGCAGGTGGATGCCCAGCTCGCGCCCTACGTCATAGACCTGCAGTCCATGCATCAGTTCAGGCAAGACACAGgCACAATGCGTCCCGTGCAACGTAATTTCTACGACCCGTCCTCGGCTCCAGGCAAGGGCATCGTGTGGGAATGGGAGAACGACTGCGGCTCCTGGACGCCGTACGACATGGAGCTGTGCGTCAGCATCCAGAACGCCTACGAGAAGCAGCATCCCTGGCTGGACCTGAGCTCTCTGGGCTTCAGCTACGTAGTAGACTTCGACGGGATGTCCCAAACCAACCGGCAGAGTCAGAGGAAGCGGCGCATCCGGCGGCGGATGGACCTGGCCTACCCTCTCATCGCCGGATCCATCCCCAAGTCCCAGTCCTGGCCGGTGGGCACCAGCTCGGGGACGCCCTGCACCTGTCAGCAATGCATTCTGGTCCACAGCACGAGGGCCGCCTCCAACGCCATCCTGGCCCTGCAGCAGAGGAGGAAGCTGTACGGGACGGAGGGCGGAGCCAGCGCCGTCGTCAGGCAGAGCAACACCTTCGCCGGCACCTCCCTCTGGTCGCCCGCGACGACCGTCGCCAGGGGACACCATAACAACATATCGGTGGGAGGCGGAGGAGGAGGCGGGAAGGTGGAGATGAACTTCCCGTGCGCTCCTGCCATCGTGACGCTGCCATCCAATCACGCGCTTACTATTAACGGACAGAACAATCTGAACCGGCCGGGAACGCAGCGGATCACGGTGACGGCCAGCCGAGGATCTGTCCCTCCAGGGgttcctgcacttcctgtgaaGAATCTCACCGGGTCAGGTCCGGTCCATCCCGCGTTAGCAGgaATGACTGGGATCCTCATGTGTGCCGCTGGGCTCCCCGTGTGTTTGACCCGGGCTCCTAAACCCATCCTCCATCCACCGCCGGTCAGCAAGAGCGACCTGAAGCCCGTGCCGGGGATCAACAGCATCCGACGCAAGACCAAGAAAAAGCACCTCCGCaaagGTAAAAACCCCGAGGACGTGGTTCGGCGCTACACGGAGAAGATCAAGTCGGCTCCCGATGAGGACTGCACCATCTGTATGGAGCGACTGGCCACCGCGTCCGGATACGAGGGAGTGCTGAGCTACAGAGGCATCAAGCCCGAGCTGGTCGGCAAACTGGGAAAGTGCGGACACATGTACCATCTTCTGTGTCTGGTGGCCATGTACAACAACGGCAATAAGGACGGCAGTCTGCAGTGTCCCACCTGTAAGGCCATCTACGGGGAGAACGGCACACAGCCTCCTGGGAAGATGGAGTACCACGTGATTCCTCATTCTCTACCTGGATACTCCGACACCAAGACTATACGGATCGTCTATGACATTCCAGCTGGGATACAGACCACAGAGCACCCGAATCCCGGGAAAAAGTACAGCGCGCGCGGATTTCCTCGACACTGCTACTTACCAGACAACGAGAAAGGCCGGAAGGTGTTGAAGTTGCTCATCACGGCGTGGGACCGTCGCCTGATCTTCACCATCGGGACGTCCAGCACCACGGGGGAGACGGACACGGTCGTCTGGAACGAGATCCACCACAAAACAGAGTTCGGCTCCAACCTCACGGGCCACGGCTACCCCGACCCCAACTACCTGGACAACGTGATGAGGGAACTGGCCGCTCAGGGCGTCGGAGAGGACAACCTGAAGGACTGA

Function

GO: NA

KEGG:

id description
K06058 DTX; deltex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89034 lncRNA downstream 1345 1399728 ~ 1493160 (-) False G60198
TU89032 lncRNA downstream 1345 1401489 ~ 1493160 (-) False G60198
TU89033 lncRNA downstream 1345 1401489 ~ 1493160 (-) False G60198
TU89031 lncRNA downstream 1345 1488254 ~ 1493160 (-) True G60198
TU89035 lncRNA downstream 1345 1488254 ~ 1493160 (-) False G60198
TU89086 lncRNA upstream 18982 1542446 ~ 1544129 (-) True G60217
XR_006251559.1 lncRNA upstream 127456 1650920 ~ 1655010 (-) True LOC122350073
XR_006251560.1 lncRNA upstream 134274 1657738 ~ 1659992 (-) True LOC122350074
TU89078 lncRNA upstream 138025 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA upstream 140838 1664302 ~ 1666989 (-) True LOC122350072
XM_043246610.1 mRNA downstream 39975 1447000 ~ 1454530 (-) True LOC122350264
XM_043246612.1 mRNA downstream 137552 1349171 ~ 1356953 (-) True LOC122350266
XM_043247081.1 mRNA downstream 241989 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA downstream 241989 1250060 ~ 1252516 (-) True pym1
XM_043246296.1 mRNA downstream 246141 1244834 ~ 1248364 (-) False LOC122350094
XM_043247339.1 mRNA upstream 38082 1561546 ~ 1606609 (-) True LOC122350657
XM_043247340.1 mRNA upstream 104189 1627653 ~ 1646362 (-) True LOC122350659
XM_043246173.1 mRNA upstream 186894 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 186896 1710360 ~ 1714216 (-) False LOC122349997
XM_043246175.1 mRNA upstream 225598 1749062 ~ 1762549 (-) False LOC122349998
TU89022 other downstream 137574 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 335259 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 356353 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 762885 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 923532 565886 ~ 570973 (-) True ccl27a
TU89089 other upstream 53341 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 53341 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 78057 1601521 ~ 1605113 (-) False LOC122350657
TU89063 other upstream 209400 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 225683 1749147 ~ 1753916 (-) True LOC122349998

Expression Profile