RNA id: XM_043247290.1


Basic Information

Item Value
RNA id XM_043247290.1
length 2244
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC122350625
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7 ~ 83028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGGGGGACGGCGAGCAATTGCAATGCTGCGACGCGGCGAACTTCCACTCAACTTCAAAACGCGATTCATTTCCGCCTCTGAGATAACTATGTACTCTCCGTACTGCCTGACACAGGATGAATTCCATCCCTTCATCGAGGCTCTCCTCCCGCACGTGCGGGCGTTCTCCTACACCTGGTTCAACCTGCAGGCCCGCAAGCGCAAGTACTTCAAAAAGCACGAGAAGCGCATGTCCAAGGACGAGGAGCGCGCCGTCAAAGACGAACTCCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCGTCGCGGCTGCTGGCCAAATTGCGCAAGGACATCCGGCCGGAGTTCCGTGAAGACTTCGTGCTCACCATCACGGGGAAGAAGCCGCCGTGCTGCGTGCTGTCCAACCCCGACCAGAAGGGCAAGATCCGCCGCATCGACTGTCTGAGGCAAGCCGACAAGGTCTGGCGCCTGGACCTGGTGATGGTGATCCTGTTCAAGGGGAGCCCGCTGGAGAGCACAGACGGAGAGAGATTGGTCAAGTCCCCGCAGTGCTCCAACCACAGCCTGTGCGTGCAGCCGCACCACATCGGAGTGTCCGTCAAGGAGCTGGACCTGTACCTGGCCTACTTCGTCCACATGCCAGAATCTGGGCAATCAGACAATTCCAATCAACAAGGAGAGTCGGACATCAAACCTCCTCCAAACGGACATCTGAGTTTTCAGGACTGCTTTGTGACTTCAGGGGTGTGGAACGTAGCCGAACTGGTGCGAGTGTCTCAGACCCCCGTTGCAACAGCATCAGGTCCTAATTTCTCTCTTGCGGATCTGGAAAGTCCCGGTTACTACAATATCAACCAAGTAGCACTCGGCAGACGTTCACTTGCCTCTCCTCCATCCACAAGGTCTGAGGTGGAGCTGTACGCCAGTCTTCCTCGGAGCTCTAATAAGCGTAAGTCTATAGATGACAGTGAGATGGAGAGTCCTGTCGATGATGTCTTCTACAGTCGTTCTCCGGCCGGCACCAGCTCTCAGTCCAGCGGCTGGCCGAATGATGTTGATGCAGTTGCAGTGCAGCACCATTTGACGAGTGTTCAAGAGCGGAAGATAAAACATGAGAATGATGGTGTGCAGTTTCCTTACCATGGGCTGTCCTCTCCTGGGTCTCTAAAGAAGCCAGCGGGGAAATTCGATTTCAGCGCCCTGTCAGCACAGACGAGGTCCCCCCGAATGGCCTTCACACACCACCCGCTGCCCATGCTGGCAGGCGTGAGACCAGggAGTCCGCGTGCCTCAGCCTCTGCCCTTCATTTTCCTGCTCCCTCCATCATCCAGCAGTCCAGTCCATACTTCACCCACCCCACCATCCGCTATCACCACCATCAGGACCCTCTCAAAGAGTTCGTCCAGTTCGTCTGTGCTGTCGGCTCGGGGCAGCCGGGGGCACagTCTTCGTTTATcttgatttgatttcagtttcATCGCCTCATTTGTTATACAAAGTGTCATGAATCCCGAAAACAGATATGGGCAGTGAAAGCATGTTAggtttaaacaaattaaagattCATCGCATTTCTGTAtcttaaacattttatgaaaagtGGTGCAGGACACATTGCTATATAAGTGTACagttatttgttatattaaattattttccaaaaaataagGGAATGCTTAATTGATGAAAATCACTAGACTTTAGAAGAATGGAAATGTTATATACATCATATTAGTTACTATTATggtgcttttgtgtttgttttgtagcTCCACACCCCCAGTCCCCATTTACTTTTATAGTATGtattattgaaaacaaatatttaattcaaatatgaTAACATGATAATgctaacattattaaataatttatataataaataattattataaaattcttaattaattaattaattaattaaaaaaatatatatatatattaaaactatttaatattgGTGAGAATTGCTAagtatgtctttaaaaaaaattacagtaatacagtTAACTGTCGAGTCGAAATCAGTTTAGCAAAAAGTCCATTAGCAAAATAGAATTTTATGACACTTTAGTAACTCgtgtatgtttattaatttttgaatgTCTTTGTACGTTTGTAACATTCCTATCTCACCCTTTGTGATTGCACGCCTCCACATGTAtctgcgtgtatgtgtgtgagtgtgtgtgtgcctcttTCACCCCCTCAccatctgtatgtgtgtgtgtgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88197 lncRNA upstream 13374 83574 ~ 83853 (-) True G59654
TU88237 lncRNA upstream 165874 236074 ~ 236657 (-) True G59688
TU88239 lncRNA upstream 165874 236074 ~ 236657 (-) False G59688
TU88300 lncRNA upstream 444567 514767 ~ 551882 (-) True G59739
TU88322 lncRNA upstream 475719 545919 ~ 547911 (-) True G59750
XM_043247900.1 mRNA upstream 131947 202147 ~ 295270 (-) False efna5b
XM_043247899.1 mRNA upstream 131947 202147 ~ 295270 (-) True efna5b
XM_043247017.1 mRNA upstream 292378 362578 ~ 532388 (-) False fbxl17
XM_043247016.1 mRNA upstream 292378 362578 ~ 532374 (-) True fbxl17
XM_043247018.1 mRNA upstream 378321 448521 ~ 532374 (-) False fbxl17
TU88755 other upstream 495686 565886 ~ 570973 (-) True ccl27a
TU88852 other upstream 656989 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 1065201 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 1070498 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 1281710 1351910 ~ 1356931 (-) False LOC122350266

Expression Profile