RNA id: XM_043247301.1


Basic Information

Item Value
RNA id XM_043247301.1
length 2335
RNA type mRNA
GC content 0.48
exon number 8
gene id seta
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2071889 ~ 2075596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acccatgaccttggcgtTTGTGCCGTACAGCAGTTCGGGGTCATTCACGAATAACCTTTTTACGTAAAAAACGTTCGGatgcatttttaactttttaactcgaacgctgcatttttaaaaagttcttcaTGCATGGGACGCAGGTGCAACGGTTCTCATGCAAAGTTTGTGTCGAAAAACAACGGAACAGTTGCTCAGTGCAATGCAAAATGCGTTCGGCGTGAATGCTTGTTCGGTtttaagggttagttcaccccgaaatgaaaaattctgtcattaattactcgccctcgtGTTGTTTTAAACCCGTAAGAGCCATTCTCAGAAACATAGCAAGGTAAAACAAACATCAGTAGCTCAACTCAAGCTACTAGAACGCTTTTAATGCACAAAGACAACAGTTTCTTGAACAATTTCTTCTCCCCTGCCGTTTTGGAGAATgctttctttgtgcacaaaaagcgTTAGCATAGCTAAAATGAAGTTGTGCCGCTGATGCACATGGACGGTTTCACTGATGGCCTTGCTACGTTTCTGGGACCGGGAACATTTATGGAGGGCCAGAGATctcacagatttcatcaaacgTCTCTTAATTTGTGTCCCAAAGATGAACAAACGTCTTAATGGTTTGAAACGGCACGAGGGCGAGTCATTAATGACAGGATTTTGAACCAATCCACTGATTGAACACACTCCTGTGTGTTTACTTGCGGTGCTGTTTAGTCCAGAACCATTTTATCTACATTCAGGTGACATGTTATGAGAGCTTCGTTAAAATCCCGCCCTTTTTGTAGCGGTTCCAAACCCCGCCCCGCCCTCGCCGGCGCCGGCCAATCAGAGAGCGCGACCGGGGATCGACGGCGCGCGCGGCGGGTTGTTCTGGAAGGGGCGGAGCTCATTTTTCGAGCTCGTGCGGGGCGCGTTCTGTCCGAAAGAGCGCGTGAGAATCTGCGTTCGTTCCCTCGCGGTAAGTTTGTGTGCGGAGCAGCGCTCGTTTCTCTTCTTGTCCTATCGCAAGTCTCCAGAAGCCGAGTTCAAGGAGGACGATCTTCTACCTCAGCGAGTTTAAAAACCACAGCGCTTGATTCTCACTGAAAACTCCTCTCGTCGTGATCAGTGAAATCATGTCTGCCTCAGCGGCTAAAGTCAGTAAAAAGGAACTGAACTCGAACCACGACGGCGGGGACGAGACCTCGGAAAAAGAGCAACAAGAAGCCATCGAGCACATCGATGAAGTACAGAACGAAATCGACAGACTGAACGAGCAGGCGAGTGAGGAAATCCTCAAAGTCGAACAGAAATACAACAAACTCCGCCAGCCGTTCTTCCAGAAGAGGTCGGAACTCATAGCCAAAATCCCCAACTTCTGGGTCACAACATTTGTCAACCACCCGCAAGTCTCGGCTCTTCTCggggaggaggatgaggaggcgCTCCACTACCTGACCAGAGTAGAGGTGACGGAGTTCGAAGACATCAAATCCGGCTACAGAATAGATTTTTATTTCGACGAAAACATGTATTTCGAGAACAAAGTCCTCTCCAAAGAAATTCACCTGAACGAAAGCGGAGACCCGACCTCGAAGTCGACGGAGATCAAGTGGAAGCCGGGAAAAgaCCTCACGAGTCGGTCCGGTCAGACGCAGAGTAAAGCGGGCAAGAAGCGGCAGCACGAAGAGCCCGAGAGCTTCTTCACCTGGTTCACCGATCACGCCGACTCGGGGGCGGACGAGCTGGGCGAAGTCATTAAAGACGACATCTGGCCCAATCCTCTGCAGTACTACTTGGTTCCGGACATGGAGGACGAGGAGGGAGAGGGCGAGGACGAGGAGGAAGACGAGGAAGGTCTGGACGACATCGACGAAGAGGGAGAGGACGACGGAGAGGAAGAGGACGACGACGACGGGGAGgaTGATGACGGCGAGGACGACTGAAGCTGAAATAGAGGAATATTATCCACATTTCCCAAATTGCttctttggctttttttttttgttgtttttttggcgAAGCAAGGCGCttccttttcctcctcttttttttttttttttttttttttttcgtttcttGGTTTTGAGCTCCATCTTTCCTCTATCCTGAACTTGCCGTGTTGAAGTCCCCCGAACAGACTCGAAATAAACTGACTGCAAAATCTCGCCGACATGGCATCCACCATCTCAATTTCCAAATGCATTTCgaggtttaaagaaaaaagaaaagaaaaaaaaagcgaaacaCTGTAGTTACCGGCCGCGCGTCGTCTGGAGTAGACCTGCGAaatagtgttttctgttttgttttttattattataaatatatatgtacaaatatg

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89490 lncRNA downstream 32064 2037700 ~ 2039825 (-) True G60487
TU89472 lncRNA downstream 77144 1991335 ~ 1994745 (-) True G60473
TU89471 lncRNA downstream 78791 1991335 ~ 1993098 (-) False G60473
TU89469 lncRNA downstream 83336 1987773 ~ 1988553 (-) True G60471
TU89115 lncRNA downstream 221956 1849488 ~ 1849933 (-) True G60237
TU89547 lncRNA upstream 48462 2124058 ~ 2124341 (-) True G60510
TU89530 lncRNA upstream 55773 2131369 ~ 2156393 (-) False LOC122351111
TU89537 lncRNA upstream 55790 2131386 ~ 2135058 (-) False LOC122351111
TU89523 lncRNA upstream 56694 2132290 ~ 2134865 (-) False LOC122351111
TU89524 lncRNA upstream 56694 2132290 ~ 2134865 (-) False LOC122351111
XM_043247583.1 mRNA downstream 10423 2059587 ~ 2061466 (-) False c8h22orf39
XM_043247564.1 mRNA downstream 16706 2046116 ~ 2055183 (-) True acaa2
XM_043247449.1 mRNA downstream 27284 2041554 ~ 2044605 (-) True rpl6
XM_043246848.1 mRNA downstream 63791 1996550 ~ 2008098 (-) False vdac3
XM_043246169.1 mRNA upstream 551 2076147 ~ 2081503 (-) True zdhhc12a
XM_043246916.1 mRNA upstream 6445 2082041 ~ 2089293 (-) True slc25a25a
XM_043247584.1 mRNA upstream 59612 2135208 ~ 2138080 (-) True LOC122350843
XM_043247988.1 mRNA upstream 78639 2154235 ~ 2162003 (-) False LOC122351111
XM_043247555.1 mRNA upstream 328614 2404210 ~ 2419714 (-) False LOC122350819
TU89500 other downstream 10408 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 10554 2059394 ~ 2061335 (-) False c8h22orf39
TU89063 other downstream 284836 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 316505 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 317973 1749147 ~ 1753916 (-) True LOC122349998
TU89626 other upstream 385335 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 448220 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 718538 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 956871 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1769857 3845453 ~ 3850590 (-) False lhfpl4b

Expression Profile