RNA id: XM_043247303.1


Basic Information

Item Value
RNA id XM_043247303.1
length 2016
RNA type mRNA
GC content 0.49
exon number 11
gene id nr1h5
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5341394 ~ 5351279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCGAACCATTAAAATATCTGTTCCTCACTTTTCACAGCAACTTTGAAGTTGATCTTAAAAACTGGACAGGACAATGTTAAATTGCCCTCTTTGGTGTATTATCGACTTTCTGTGACCCCGTGTTTAAAGTCACACACGTACTGGTATGTGTTTGAATTAATGGTTTGTGTTGGAGGGAAGCGCTGTTTGTTttgcgcatgtgtgtgttccAGTGTGTGTTTGGCAAGTGTTGGACGTCAGGGGCTGAACTGCTGTCAACATCACAAATGCAAGAGGCACATCAAGCAGAGATCCAGCACACGCAACATCAGCGCTGATTCAGACATTCTCTGTGAAGAGCGAGAATCCAACTGATCAGATGAGAGAGGGGACAGATCCTGAGATGAGCATGTCAGTCAGTGGCTACCTCTCTGCATCAGACACGTATGACATCACAGAGCCACCACAGTACTATGATGTTCTTGTGGATCCACTGAGTTGCCCTTATCAGGAACCAGATCTACAAAGTTCTCTCTATGGCCAGCAGCCGTTCAGCCATGTCAATGTGCAGTTTTCAATGTATGGAGCGCCAAACTCTCAAGTGTGCAACCCGCCGTACCCCTACAGCCATCAGTGCTCTGAGTTCACCTGTGAGCCAGACATGGAGGTCCAAAGCCCAACAAGAGGTAGCATTGTCAGCCTTCCAGTGTTAAAAAGACCCAGGATGGGCCACGGTGCCCGAGTGAAGGGCCAGGATGAGctgtgtgtggtgtgtggaGATAAAGCCTCGGGATATCACTACAATGCCCTCACCTGCGAGGGATGCAAAGGTTTCTTCAGACGCAGTGTGACTAAAAAGGCAGTGTACCGCTGCAAGAGCGGCGGAAGCTGCGAGATGGACATGTACATGCGGAGAAAGTGCCAAGACTGCAGGCTGCGCAAATGCAGAGCCGTCGGGATGCTGGCAGAGTGTCTGCTTACAGAGGTGCAGTGCCAGTCGAAACGACTGAGGAAGGGCTCCAAGCACAGAGGACACAATGGGTCAACAGGAAGAGGTGAAGAAGACTACTCTGAAAGCAGAAATGTCTCATCCACCAGCAGATTCCCCTCTCGGGTATCTGGTTTCTCCCGAGAGCAGAGATGCGTTCTGAATAGAATTGTTGAGGCTTATCGTAGGTACATAATTCAAGACAACACGCACTGTCGgGTGCCTCTGTGGTCAAGTTTGACAAACAGTGTAGACCTGACTCCTCCACAGACAGAGAAGCTTTTGCAATTTTTGAGGAGCGTACCTGGGTTTGAGCTTTTGGATGGTTCTGACCAGAACACACTTCTGTCCAGCTCTTCAGTTGAAGTCATGTTTCTACTCTTGGCTCAGCAGTTCTCAGAGAACCCCACTAGTGTCAGCAATgCTTTATACCCAGCGAATTCAAACAACTCAAACCCTGACTGGGTGAAAACTTTAGAGTCCAAGACTGGGAACAGCCACAGAACACTGACACACTCAGGGTTGAATGATGAGTTCTTGAGGTCTGTGGTAAATTTCCTCCACAGCATGGTGACTATTGCGGTGACTGAGGCTGAATATGCACTTCTAACAGCGACTGCAGTGTTATGCTCAGACAGGCCGTCTCTGCGTGCGGTGGGCTGTGTTGAGAACTTACAGGAGTTTGTTTTGGAGCTTCTGTCCCGAGCTTGCTGCTGCTGTAGTCAGGGGACGGCACAGGACCCACGACGCTTCGCCAGGCTCCTGGGACGGCTGACGGAGCTGAGAACGCTACGACACAACCACCTCACCCTTCTCCCACAGCAGCCCTGGGACATGCAGCCTTGAGACAGCCTTTAGGGAGAGAGATTTGTGACATCTGATTTGCAatacacttttcatttttgcacaGAACAATATCCCAGGTCAGTGTACTTTTGGTTACCCGTGTGcaaacatagtaaaaaaaaaaaaaaaaaacctaaacaaatgTAAGCCTCATGATGTGACATTTTCttatatgcattaaataaaactgttaatgttta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90998 lncRNA downstream 1442 5323112 ~ 5339952 (-) True G61476
TU90965 lncRNA downstream 75356 5143199 ~ 5266038 (-) True G61459
TU90605 lncRNA downstream 335828 4961583 ~ 5005566 (-) True G61216
TU90603 lncRNA downstream 338511 5001567 ~ 5002883 (-) True G61215
TU90599 lncRNA downstream 387948 4953055 ~ 4953446 (-) True G61212
TU91050 lncRNA upstream 219132 5570404 ~ 5573893 (-) True G61502
TU91067 lncRNA upstream 231643 5582915 ~ 5584720 (-) True G61507
TU91041 lncRNA upstream 256415 5607687 ~ 5609427 (-) False c8h9orf116
TU91040 lncRNA upstream 256761 5608033 ~ 5609427 (-) False c8h9orf116
TU91083 lncRNA upstream 263057 5614329 ~ 5617664 (-) False G61513
XM_043246081.1 mRNA downstream 133940 5195752 ~ 5207454 (-) True LOC122349940
XM_043247542.1 mRNA downstream 153473 5187254 ~ 5187921 (-) True LOC122350811
XM_043247543.1 mRNA downstream 481093 4853786 ~ 4860301 (-) True si:dkey-8e10.3
XM_043247747.1 mRNA downstream 652052 4674326 ~ 4689342 (-) False ptpn18
XM_043247863.1 mRNA upstream 2347 5353619 ~ 5361985 (-) True slc66a1
XM_043247338.1 mRNA upstream 11454 5362726 ~ 5384419 (-) False trim33
XM_043247336.1 mRNA upstream 11454 5362726 ~ 5384418 (-) True trim33
XM_043246129.1 mRNA upstream 34435 5385707 ~ 5390120 (-) True bcas2
XM_043246767.1 mRNA upstream 39553 5390825 ~ 5410171 (-) False dennd2c
TU90970 other downstream 133872 5202498 ~ 5207522 (-) False LOC122349940
TU90968 other downstream 143505 5196611 ~ 5197889 (-) False LOC122349940
TU90966 other downstream 153478 5187315 ~ 5187916 (-) False LOC122350811
TU90417 other downstream 944320 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 1033895 4300992 ~ 4307499 (-) True G61023
XR_006251650.1 other upstream 124941 5476213 ~ 5510943 (-) False pip5k1bb
XR_006251542.1 other upstream 254290 5605562 ~ 5609570 (-) False c8h9orf116
TU91084 other upstream 263057 5614329 ~ 5617664 (-) True G61513
TU91112 other upstream 568689 5919961 ~ 5925347 (-) False LOC122350596
TU91179 other upstream 1079760 6431032 ~ 6442982 (-) False LOC122350671

Expression Profile