RNA id: XM_043247312.1


Basic Information

Item Value
RNA id XM_043247312.1
length 3026
RNA type mRNA
GC content 0.39
exon number 6
gene id rab35b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2510789 ~ 2518882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTGTGCGGCAGGAGGAAGCGCCGTTTCCGGTAACGAGCGACTGACTGCTGACACCGCCAAACCCCGACGACGAACCCGCGGCTTTCGGCATCCACCGCGGGGAAAGTGTCCGCTCTTATCCGAGCGGGACGTCAGACGGGTTCCGGCCAAGCGTTCGGCCGGAGAGAGGCGCGAAGCTGCAGCGAGGGCGCGGGGTTTGAGCCTCCCACCGCCGGCATGGCCCGCGACTACGATCACCTCTTCAAACTGCTGATCATCGGTGACAGCGGTGTTGGAAAGAGCAGTCTTCTCCTGCGCTTCGCAGACAACACTTTTTCAGGTAGTTACATCACCACTATAGGAGTCGACTTCAAGATCCGGACGGTGGAGATCAATGGAGAGAAGGTGAAACTGCAGATATGGGATACAGCCGGACAAGAGCGCTTCCGGACCATCACGTCTACGTATTACAGAGGAACCCACGGGGTCATCGTAGTGTATGACGTCACCAGCGCCGAGTCCTTCGTCAACGTCAAGCGATGGCTGCACGAAATAAACCAGAATTGCGACGACGTCTGTCGAATATTAGtgGGCAATAAAAACGATGATCCGAACTCTAAGGTTGTGGAGACAAATGATGCACAGAAGTTTGCTGAGCAGATGGGCATCAGTCTGTTTGAGACGAGCGCTAAAGAGAACGTCAACGTGGAGGAGATGTTTAACTGCATCACGGAGCTGGTGCTCCGGGCGAAGAAAGAGTCCGTGGccaagcagcagcagcagcagcagaacgATGTGATTAAACTCAGCAAGAACAGCAAACGAAAGAAGAAATGCTGCTAGTGGACGAGCGGACGTTCCTCAGTTaagatttcacaaaaaaaaaaacacagtgcgGACTGATGCAGTCCTTTCCGGACCGAGACAAACcacaaagactttttaaaagaaaatgtacagaTTTTATGAGAGTCGAGGAGTTTTACGTGGAATTcgtgatatttaataaaagatcCTCCTTCCTTGTAGAAGGACCAGCAAGCTGACGTGATCGCCAAACCTGTATGCTTTCACAATAACTCTTCAGTGATTATATATATCTCTATTATACACCATCTCAggagtgatttttattttgattctcTTTctcgctttttattttttggcgcAAGAACGATTTGGGCCCCCtccccttttttaattttttttttttttttttttaagaaatcataCAAATACAGACATTTACTCGCCATGTACTCCGTCGGAGACCAATGCCAACAACTTTAGGTCACTTTTAGACGTTATTGATTAGTGATCCATGGTGTGTGTTCATTCTCTGAACGGATCTTTTCTTCTTCAGGCCTGTTTCAGTGAGTGAATCTCATAAAAAGGTTGCATcttaaagtgtatttatatttggaattaaaaaaatgaagactTTGCTTAGGATCAATGATATTTCATGCCAAATTCTTGATTTtcattatcatatatatatatatatatatatatatatatatattattattattattattattattatttatttttttttttttttttttttttttttgtgtgctgcATTGAATTGATGCTTAAagaaatcatacatttttaaaatgaattaaaatgactgttatAGCAATAAAAATCCGAAATTTAAACATCTGGATGCTTCATGAAAATGtggtcaatataaaaaaaatgcaatggtCCTAACATAGGCTTCATTTTTCGTTCAAATGAAcgttttttgcctttttagatgaacatgtttttgtgagattcacctcAATAGTTCAGGCTTGGGTCGTTCGTGATGTGGGCGGAGTTCCTTTGACGTTCAACGACGTCTTCTGCCGCTTCAGGCCCGCGTTCTTCTGCTCTCGTTTTTCCCGTGAAGATGAAGGTGGATGAAGCTGCCATAATCTCAGAACGGTGTTGCCACACGTTTGGTTGTAGTATTCGTCCGGACGCTGGGGTCGCGTCTTTGGCTTCGTGGAATGCGTTCGATCGAAGCCGGTGATGAAACCGATTTCATCTTCTGCATCTCCTCGAAGAGCAACGTTGTTGTGCCACACGAGGTTGTATGAAGTACAACGCAAGACGCTGATACAACGTTTAAAAACCTAACAATTACCGTGTTTATACAGAGTCTATCGCtaatatgaaatgtaatgtttttatatgtgaCATCCCTAAGTTTCTTGCTGTTGACACTTTGACTGAATAGTCTTTATGACAGATGCACATCCCTCAGAGTTATCTTCTAGTGGCATCTCTGTGGAGGTGAATCTCACCAAAACATGACTGTgttcaccttaaaaaaaaaaagattttttttcataaagaaaatgaagctgATTATTAGGAACACTAATGCTGTCTTTtgcattataatgtaaaaaaaaatatatatatattttttttttttttgcaaagaatttcattaaatgcataaattccCCAGTGAAAGCGAAGCCAGTTTTTAGGTGCATTATTTtcgttataaaaaaaaataaaaattctttctGAAAATTATAAAGACAATTTGTTTTGGTTCATGCAATAAATTTAGATCTGGGTTTAAATCatcattacaacaaaaaaaggcatattcatgtttttgttttgcatgaagatgtaaaatgtacagtttttgcGTACAGcacctttttttaatgtctgttttgaagtaatttttaaatataaaaacattgaaaaagaTTAAGGAACCTAAAAtgagcttaatttttttttttttttacatttttttaacatctgaaatgtcattttgtttttgagcagttttgtgagattcaccaACAGAAATGCtttcatgaatattcatgattCATTTAGTAAGCCAAACGCTTTCGACCCAGTCACGTGACTTCAGTTCATCGCGAAGCGTGCCGGTCGAAGCGCTTTTTTCAGCTGTGGTTATATTATACACTGGAGAAAAGAAATGTATAGTGGACCTCCCCTTTATGAactaaatcattaataaatattttaagaattaataTTTGACACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07876 RAB35, RAB1C; Ras-related protein Rab-35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89255 lncRNA upstream 88572 2408095 ~ 2422217 (+) True G60342
TU89248 lncRNA upstream 166620 2343936 ~ 2344169 (+) True G60335
TU89239 lncRNA upstream 306479 2192957 ~ 2204310 (+) True G60328
TU89233 lncRNA upstream 345547 2163307 ~ 2165242 (+) True G60323
TU89206 lncRNA upstream 348745 2159314 ~ 2162044 (+) True G60297
TU89288 lncRNA downstream 1948 2520830 ~ 2524134 (+) True G60347
TU89289 lncRNA downstream 1948 2520830 ~ 2523944 (+) False G60347
XR_006251673.1 lncRNA downstream 38148 2557030 ~ 2559048 (+) True LOC122351006
XR_006251674.1 lncRNA downstream 38148 2557030 ~ 2559048 (+) False LOC122351006
TU89315 lncRNA downstream 91435 2610317 ~ 2612227 (+) True G60361
XM_043246386.1 mRNA upstream 2675 2465043 ~ 2508114 (+) True gcn1
XM_043245996.1 mRNA upstream 46407 2431894 ~ 2464382 (+) True pxnb
XM_043247512.1 mRNA downstream 41471 2560353 ~ 2609576 (+) True LOC122350791
XM_043247509.1 mRNA downstream 41471 2560353 ~ 2609576 (+) False LOC122350791
XM_043247513.1 mRNA downstream 41471 2560353 ~ 2609576 (+) False LOC122350791
XM_043247506.1 mRNA downstream 41471 2560353 ~ 2608977 (+) False LOC122350791
XM_043247508.1 mRNA downstream 41472 2560354 ~ 2609576 (+) False LOC122350791
TU89218 other upstream 470953 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 474809 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 477726 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 493269 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 592418 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1329732 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1405979 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1529737 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2585688 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2585688 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile