RNA id: XM_043247316.1


Basic Information

Item Value
RNA id XM_043247316.1
length 3428
RNA type mRNA
GC content 0.49
exon number 21
gene id dpp9
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23598728 ~ 23612503 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTTCCGGTGTGGCTGATGATGTTCGGTTGGCTTTCCTCAGCACTCATGACTGTCGCTTTGTGCTGTTCTCATGCTTATGGACTGTGTGTTTACCTGCAAATACGTTTAGGAAATCGACAGGTCACAGATGAGAGTTTTCTTTGAGGGTCTACCTGTTGCCAGATCTTGTTGAGGGTTGTGTGCTGGTTAATGTATAGAGGAAAAAGGGTGAAACTTGAAGACGAAACTGAAGGTAGTTGGAAAAGTTTTGCAGCTGTCAGAATGACCGCAGTAGATGAAATCTCAGACAGCACGGAGGTTGTGGAAATGGATGACGTCCCTTCCCAGTTTTTCGTGGAGAAGCACTCATGGGACGGCTTGCGTGACATCATTCACGGCAGCCGGAAATACTCGGGAATGATCATTAACAAGGCTCCCCATGACTTCCAGTTTGTTCAGAAGCACGATGAGTCCGGCCCTCACTCGCACCGGCTTTACTACCTTGGAATGCCGTACGGGAGCAGAGAAAACTCATTATTGTACTCTGAAATCCCAAAGAAAATACGGAAAGAAGCCCTTCTGGTGTTATCATGGAAACAGATGTTAGATCACTTTCagGCGACTCCACATCATGGCGTGTATTCCCGTGAGGAGGAGCTTCTCCGTGAGAGGAAGCGTCTGGGGGTCTTCGGCATCACGTCCTATGACTATCACGCACAAAGCGGCCTTTTCCTCTTCCAAGCAAGCAACAGCCTTTTCTATTGCCGCGATGGCGGCCATAACGGCTTCATTGCCGCCCCAATGAAGCCAATGGAAATCAAGACTCAGTGCTCAGGGATTCGCATGGACCCCAAGATCTCGCCTGGTGATCCCAGTTTCATTGCCTTCATAAATAATAACGACCTGTGGGTGACGAATATTGAAACCGGAGAGGAGCAAAGACTTACTTTCTGTCATAAAGGATTGAATAATGTCAAGGAAGACCCAAAGTCTGCTGGTGTTGCAACCTTTGTGATCCAGGAGGAGTTTGATCGCTTCACGGGATATTGGTGGTCTCCAGCTGCTCCTGAAGATGCAGATGGAGGCAGAACGCTCCAGCTGCTGTACGAGGAGGTGGATGAGTCAGAAGTAGAGATTATTCATGTGCCCTCGCCAGCTTTGGAGGAGCGCAAGGCAGATGTGTACAGATATCCTCGCACCGGAAGCAAGAACCCTCAAATTAGCCTGAAATTAGTAGAGATTCGGACCGATCCACAGGGCAAGATTATTAGCACACAAAACAAGGAGCTCGTTCTCCCGTTCACCACGCTTTTTCCTGGGGTCGAATACATTGCGAGAGCTGGATGGACAAAAGATGGTAAATTTGCTTGGGCGGTGTTGCTAGACCGCAGTCAACAGAAGCTGCAGTTAGTGCTGTTACCGCCCGCGCTCTTCATACCTGTGAGCGTGGATGATCCGCAGTGGGAGGAGCATGTGGAAGCCATGCCCGAGGGAGTCCAGCCCTTCATCATCTACGAGGAGGTCACCGACATCTGGATCAATGTCCATGATATCTTCTATCCTTTCGTTCAAACAACTAATGACAAGATCTCCTTCCTGTGGGTGAACGAATCACAAACAGGCTTCTGCCATTTGTACAGAATAACCAGTCTTTTTCAGCCGGGCTGCCAGCAGTGGTCCAGAGAATACAGTCCAGCAGAAGATGATTTCAAATGCCAGATAGAGGAGGAGGTGGCTTTAACGAATGGAGAGTGGGAGGTCTTGGCCAGACACGGCTCAAAGatctgGGTCAATGAAGAAACCAAACTGGTGTTTTTCCAGGGCACAAAAGATACTCCACTTGAGCACCATCTGTATGTAGTGAGCTACGAATCTCCTGGAGAAATTGTCAGACTTACTAAGCCGGGATTCTCTCACAGCTGCTCTGTtagccagAACTTTGACATGTTTATTAGCCACTACAGTAACGTGAGCACGCCTCCGTGTGTTCACGTCTACAAACTGATGGGTTCTGACAGTGACCCCCTCCATAAAGAGCCAGAGTTCTGGGCGAGCATGATGGAGGCTACAGGTTGCCCGGCTGATTATGTCCCTCCTGAGATATTCAGCTTCCCTGCCAGTTCTGGTTTTCGTCTCTATGGAATGCTGTACAAACCTCACAACCTGAAACCAGGCAAAAAACATCCCACAATCCTGTTTGTGTACGGCGGTCCACAGgtGCAGTTAGTGAATAACTCTTACAAGGGTGTGAAGTATCTGCGTCTCAACACACTGGCGTCTCTGGGTTATGCTGTGGTGGTCATTGACGGAAGAGGGTCGTGCCAAAGGGGCCTGAAGTTTGAGGGGgcacttaaaaacaaaatgGGGCAGGTGGAGATTGAAGATCAGGTGGAGGGACTTCAGTATGTAGCAGAGAAGTACAAGTTCATAGACATGAGTCGAGTTGCCATCCATGGTTGGTCTTACGGAGGATTCCTGTCTCTTATGGGCCTCATTCACAGGCCAAACATCTTCAAGGTGGCCATAGCTGGAGCTCCTGTGACGGTGTGGATGGCATACGATACTGGTTACACCGAACGTTACATGGACGTGCCTGAAAATAACCAGCAGGGATATgaggcgggctctgtcgccctGCACGTCGACAAACTTCCCAACGAgCCAAACCGATTACTTATTTTACATGGGTTCCTTGATGAAAACGTGCACTTTTTCCACACCAACTTCCTGGTTTCTCAACTCATCCGTGCAGGAAAGCCATATCAGCTACAGATCTACCCCAATGAGAGGCACAGCATCCGCTGTCCCGAGTCCGGAGAGCACTACGAGATCATGCTACTGTACTTCCTCCAGCAGCACCTCTGATGAGCGCCTTCTCCATTCCCAGCCTCCTCTTCTTCCTTCAGCAGCAATGACGGCCCTCACCGGTTCCCCAACCCGCCTTTTGCTTTCTCGCACTCTTTCTGGAAGGAGTGTCTCCGCCGCAGCCAGAAACAGACTCGTCCCCCGAACTTCATGTCATTTTGTGCATGTCAGCACACTTTTAACAGAAAGGACACATCCGAGAACGGAGAAGAAACCCAGTAGCTCATTAACCTCATGAAATAAATTTTGGATCATGTGCCACATCTATGTAATGTTTCCTTTCTGGCTCCCTTTGAAACACTGATTATGTTGCCAaatgtgtctttattttttaaatttgtagttAGTGGCTTATCAGAACACAGAGACTGGATTTCTACACGTACAGAAATGCTCTTGCTGCCCCCTCTGCTCATTTAACTTAAGCTTTTTCAGTTCTATGAATGCAGTCGTGTTTCGGTCCAACATGAATTACAGCGTCACTGTTAGCCGCGGTCCTGTGGCTCTCACGTAAGGACACCTCACACTACTACCTGCAGTTCATATTTTAAGTGTGTATTATTAAAggaacatatttttta

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98180 lncRNA upstream 163695 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 164983 23432809 ~ 23433745 (+) True G66350
TU98171 lncRNA upstream 193416 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 358916 23231564 ~ 23239812 (+) True LOC122350913
TU98273 lncRNA downstream 2713 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 8424 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 63931 23676434 ~ 23681832 (+) True LOC122350145
XM_043246659.1 mRNA upstream 1597 23586529 ~ 23597131 (+) True si:ch211-251b21.1
XM_043246660.1 mRNA upstream 1597 23586535 ~ 23597131 (+) False si:ch211-251b21.1
XM_043246655.1 mRNA upstream 15351 23482896 ~ 23583377 (+) False plch2a
XM_043246995.1 mRNA downstream 19847 23632350 ~ 23634056 (+) True ndufa7
XM_043247538.1 mRNA downstream 22646 23635149 ~ 23656851 (+) True ppih
XM_043247539.1 mRNA downstream 22689 23635192 ~ 23656851 (+) False ppih
XM_043246391.1 mRNA downstream 45578 23658081 ~ 23664434 (+) True ybx1
XM_043246392.1 mRNA downstream 45579 23658082 ~ 23664434 (+) False ybx1
TU98168 other upstream 446781 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 613144 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1477932 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1480894 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1634170 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 19880 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 140065 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 140958 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 140958 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 143188 23755691 ~ 23783631 (+) False acot7

Expression Profile