RNA id: XM_043247338.1


Basic Information

Item Value
RNA id XM_043247338.1
length 3950
RNA type mRNA
GC content 0.50
exon number 19
gene id trim33
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5362726 ~ 5384419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttatttttttcatttgtatttctcTGTGACGAACACGAGAGCGACGGCATGACGTCACGCCGATCGGATTTTCTGAGCGCGTCGAACGTCAGGCGGTTCAAAGAGGAGCAAAGATGGCGGACAACAAAGGCCAAGATTGTACGGAGAGCTCCGCAAATATGGAGGTAGGGGCTTCGGGAACGGAGGATAACGGAGACAGCGCCTCAAAAGACCCAGACGCGGTGATTTTAATCGACTCGGAGCCGAAGGAAGGAGCAGACGAGCTCAAGTCTCAAGAGACCGTTCCCCAAGCGCTGACGACATccagcggcggcggcggcggagcTACAGACGGGACCCCAAATACCGAGAGCGCCGAGCCACCGCCgccgtcctcctcctcctcctcctcagcgGACAGCACCGCTGCTGGCGCATCACCCGCTCTCGTTAACGAGATGTCGCCTCCTCCACCAGCATCCTCAACCTCCTCCTCTTCAACAACCCCTGCCGCCCCGATAAATCTGCTGGATACGTGCGCTGTGTGTAAACAGAGTCTCCAGAACCGCGACTGTGAACCCAAACTCCTGCCCTGCCTGCACTCCTTCTGCCTCAAGTGCATCCCGCAGCCGGAGCGAAAGATCACCGTCCCGGTGCAGGGTCCTCACGGACAGGACACTCGCATTGTGAACGTAATGCGGTGCATGGTGTGCCATCAGGAGTACAAACAGATCGACATGGTGGACAATTACTTTGTCAAGGACACTTCAGAAGCCACAAGCACATCAGTGGAGAACTCTACACAGGTTTGCACCAGCTGTGAAGATAATGCCAGTGCCATTGGATTCTGCGTTGAATGTGGGGAGTGGCTCTGTAAAACCTGCATTGAAGCACATCAACGGGTCAAATTCACTAAAGACCATAAAATACGCAAAAAAGAGGATGTATCCTCTGAATCAGTTGGGACGTCAGGCCAGAGACCCGTCTTCTGTCCGGTACACAAACAAGAGGCTCTCAAGCTCTTCTGCGAGACATGTGACACTCTAACCTGCAGAGACTGCCAGCTACTTGAACACAAAGAACACAGGTACCAGTTTCTGGAAGAAGCCTTTCAAAACCAGAAGAGTGTCATTGAGGCCTTCATGACCAAGTTGCAAGATAAAAGAAACTTTGTGGAGTTTTCTGCATCTCAGGTGCAAAACAGAATTAAAGAAGTTTCTGAGACGCATAAGAAGGTGGAACATGAGATAAAAATAGCAGTCTTTACTCTCATCAATGAAATCAACAAGAAAGGCAAATCTCTACTTCAGCAATTGGAGAATGTGACCAAAGACAGGAGTATGAAGCTGCTCAGTCAACAGAGGGACATCAGCTGCTTGGCCCAGCAGATCATTCATGTGCTCAACTTCACCAACTGGGCCATCAGTAATGGAAGCAGCACAGCCCTACTCTACAGCAAGAGACTGATCACATACCAGCTGCGCTTCATTATGAAGACCCGTGTGGACCCAGTACCTCAAAGTAATGGAGCTGTCCGCTTCTTCTGCGACCCCACCTTCTGGGCCAAGAATGTGGTTAATCTTGGCAATCTGGTTATTGAAAAAGTGCCACATACTGCTCCTCCTCCCCAAATGATGGTCAATCAGCAGATCTCTCCCGGTCACAACCACCCAGGTAAGCACTCAGGACAGATCAACCTGGCCCAGCTGAGGTTGCAGCACATGCAGCAGGCTGCAATCGCTCAAAAGCACCAGcaccaacagcagcagcagcagcaacaacagcatCAGCAACAAATTCAGCAGCAGATGCGCATTGCTTCACAGATGTCCCAGCATCCCAGACAAGGAGGTCCACCACAGATAACCAGTATACAGCAACCGCCACCGAGGCTCATTAGTATGCAGGCCCTTCAGAGGGGTGGAGTTAATGGCTCCTCTCACATGTATCCACCTCATCACATGCGCATGGTATCAACACAGAACCGCATGCCTTCAACGCAGCCCCGACTCAACGGGCAACCATATCCTATGATGCAGCCTCAATTACAGAGACAGCACTCAAATCCTGGGCATGCGGGGCCTTTCCCTGTGGCGTCGCTACACAACATTAGTGCTGCCAACCCCACCAGTCCCACCAGTGCCAGTATGGCCAATGCCCACATTCACCGTGGCCCCACTAGCCCTGTTGTCGCACCCATAGAGCTCATACCATCAGTCACAAACCCTGAAAACCTGCCCTGCCTGCCCGACATTCCTCCTATTCAGcttGAAGATGCTGGTTCGAGCACACTGGATAACATTCTCAGTCGGTATATTTCTGCTAGTTCATATCCTGCTGTTGGCCCCACCAATCCCTCACCCGGACCTTCCACACATTCCCCAGGGTCGTCAGGTTTATCTAATTCTCACACTCCAGCTCGTCCGTCCAGCACGTCAAGCACGGGCAGCAGGGGCAGTTGTGGGTCGGCTGGTAGACCTGGGACGGGGAACACGGCAGTGGACCAGGTGAAGGTCAAACAGGAACCGGGAGTTGAGGAAGAATGTAGCTATTCTGGTGCAAACGTCAAAACGGAGCGCTGTAAAGATGGCAGACGGAGTGCTTGCATGATGAGCAGCCCAGAAGGAAGCCTAACCCCCCCTCTTCCCATCCTCGGCTCCGTGTCCACGGGTTCAGTCCAGGACATTTTAAGAACACTTGgtgaaaatgttaaatctgAACCACAGAGCGATCAGCGCTCGTCCTGTACGAAGCCAAACTCCAGCACACCTTTAACCAATGGGACCGCCGCGTCAAATGGGGGTCAGCCAGGGAGCACCGCTAACGCCAACAGCCAGACCACTGTAGGAAAGGAGGACGACCCGAACGAGGACTGGTGTGCCGTGTGTCAGAACGGAGGAGAGCTGCTGTGCTGTGATCGCTGTCCTAAAGTCTTCCACATGACCTGCCATATTCCAACACTCAAATCCTCTCCCAGTGGAGATTGGATGTGCACCTTTTGCAGAAGTCTCTCACATCCAGAGATGGAGTACAACTGTGATGATGATCCACCCAGTAAGGAGGACATGAGTCCAGAGGACCAGCGACGTTGCGAGCGCTTGCTGCTGCATGTGTTTTGTCATGAGCTCAGTACAGAGTTTCAAGAGCCTGTTCCTTCATCGGTACccaattactataaaataataaagcatcCGATGGATTTGACCATGGTAAAGCGGAAACTGCAGCGAAAACATTATCTGAATTACAAGAGCCCTAAAGAGTTTGTGTCCGACGTGCGCCTGGTCTTTAGCAATTGTGCCAAATACAATGAGGCCGACTCTGAAGTGGCGGAGGCGGGTAAAGCCGTGAGTCTGCGTTTCGAGGAGAAACTGCTAGAGATTTTCCCCGACCAGACGTTCCCGGTAGTCGTGGAGAAGGAGACGCGAGCGGAGGCCGAGAAGGATTCGGAGGACTCCGACGACGACGTCGTACAACCGAAACGCAAACGCTTAAAAGTGGAAACCGAGAAGCTGTTGCACATCAAGTGAAGAAAACGAGGACATGCCTGCGAGAAATAAACTGTCTTCCTCTCCAGCTCGGTCTTGTTCTGCCTTCTGAAGGGCGGGATAATGCTGGAACTGATGCGATGCAAATGCTTCGTTTATTTCATGTTCTCCCGAACCGTGATGATCCATTGTACATACAGAGTGAGAACTTTTAAAAACGTGCATTGTGGACGTtggcatcatcatcatcatcatcatcatcggaGGATCAACAAATTAATTGTTGGGTGTCGATGAAGACATTTGTACAGATTTAAATAGTCTTGTTTTGGTCTGATTTAGTAAAtaacatgttttcttttcttaaactatgagttattattattattattataatatttgtaaatctATTGTGAATGATACTTTATAAATGATACTCATCTCCCTTCTGTTGTATGATAAAGTTTATCATATATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91004 lncRNA downstream 10269 5336987 ~ 5352457 (-) True G61478
TU90998 lncRNA downstream 22774 5323112 ~ 5339952 (-) True G61476
TU90965 lncRNA downstream 96688 5143199 ~ 5266038 (-) True G61459
TU90605 lncRNA downstream 357160 4961583 ~ 5005566 (-) True G61216
TU90603 lncRNA downstream 359843 5001567 ~ 5002883 (-) True G61215
TU91050 lncRNA upstream 185985 5570404 ~ 5573893 (-) True G61502
TU91067 lncRNA upstream 198496 5582915 ~ 5584720 (-) True G61507
TU91041 lncRNA upstream 223268 5607687 ~ 5609427 (-) False c8h9orf116
TU91040 lncRNA upstream 223614 5608033 ~ 5609427 (-) False c8h9orf116
TU91083 lncRNA upstream 229910 5614329 ~ 5617664 (-) False G61513
XM_043247863.1 mRNA downstream 741 5353619 ~ 5361985 (-) True slc66a1
XM_043247304.1 mRNA downstream 11447 5341394 ~ 5351279 (-) False nr1h5
XM_043247303.1 mRNA downstream 11454 5341394 ~ 5351272 (-) True nr1h5
XM_043246081.1 mRNA downstream 155272 5195752 ~ 5207454 (-) True LOC122349940
XM_043247542.1 mRNA downstream 174805 5187254 ~ 5187921 (-) True LOC122350811
XM_043246129.1 mRNA upstream 1288 5385707 ~ 5390120 (-) True bcas2
XM_043246767.1 mRNA upstream 6406 5390825 ~ 5410171 (-) False dennd2c
XM_043246770.1 mRNA upstream 6406 5390825 ~ 5410171 (-) False dennd2c
XM_043246768.1 mRNA upstream 6406 5390825 ~ 5410171 (-) False dennd2c
XM_043246769.1 mRNA upstream 6406 5390825 ~ 5410171 (-) True dennd2c
XR_006251611.1 other downstream 11450 5341733 ~ 5351276 (-) False nr1h5
TU90970 other downstream 155204 5202498 ~ 5207522 (-) False LOC122349940
TU90968 other downstream 164837 5196611 ~ 5197889 (-) False LOC122349940
TU90966 other downstream 174810 5187315 ~ 5187916 (-) False LOC122350811
TU90417 other downstream 965652 4393213 ~ 4397074 (-) True G61071
XR_006251650.1 other upstream 91794 5476213 ~ 5510943 (-) False pip5k1bb
XR_006251542.1 other upstream 221143 5605562 ~ 5609570 (-) False c8h9orf116
TU91084 other upstream 229910 5614329 ~ 5617664 (-) True G61513
TU91112 other upstream 535542 5919961 ~ 5925347 (-) False LOC122350596
TU91179 other upstream 1046613 6431032 ~ 6442982 (-) False LOC122350671

Expression Profile