RNA id: XM_043247340.1


Basic Information

Item Value
RNA id XM_043247340.1
length 1472
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC122350659
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1627653 ~ 1646362 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGAAagattatgcatgcatttaatacgGTAAGGGAAAATCCCCTTTAAATAGGTCAAATGACTTGGACTGCGTTTACTCCAACTCTTAACGAACAGATCCGATTTTGACATTATCTAGTGTTTCTTTGGCCTGCTTGTTTACATTAACTTTAGACGTGACTGGTATCAGATATCTATGTTTGCATTAATTCAGTGATAACTTTATTATGCACATGATAGACCCTCGGATGTTAAACGGCTgtgctattaaaataatttatataactcGCGTTGAGTGGCTGTTACTATTTCCCATTTTTGACAACAGCTGTTATGGATGTTTTGCAGCACAAAATCTGACTGAAAGCATGGTTTTGTTTATCTACAGCTCGCGGTATGCACTAGTGAGTAGCCTATAGTGAAACTTGTTGGttcaattacaaaaatgacaacattatCACCTCGTGAAGGTGGCAAGGCTACGTTGAAAACCAGCTCCTGAATGTTGCATTCTTTATGGGCAAAAGTGCGACTTCTTTTTTGACACTTCACATTTTCTTGTGAACACAGAGGACGTGTGTTAAGCCTTAAGACTCAAGTCTCATGTCAGCATGAAtcagctttatatttttttattggtccTTTGGTCTGCTGTCAGTTCGTCTGATGCGTGGGAAgaatatgaaaatacaaaagATATCCCAGAGCCCATCATCACAGTGTACAGACAGCAGGAGGACGGGGAGgttgtgtttgtgctgtgcaaGTTCACCTCAGTGCCTGGAAGGAGATACAGAAGACAGTCTTTTAAGCTGTCTGTGGAGAGTGAACTAAACTACACCATGGAAACATTCAGCAACCCTTCTTTAGATTCTTCAGAGATGCGTGCGTATATGGTCACCGTGAGTCCACCTGCTTCCTTCACCTGTGTGCATGAGGTCGATTTTTATGTAGATGTCAGGAACGTGAGCAGCCAGGCCTACAATTACAGTGTTTCAGGAGTATCTTCGTTATACGCCTGCTTTTCCTCCTTCATTGCTGTTGCTCTCTTCATCATGACTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACCACGTAGAAGCTGGTGATGGTGGTGGtaatgatgatggtggtggtgatgattATGGTTGCGGTGATGATGTGGTGGTGATGGTGGcaatgatgatggtgatggtgatggtgatggtggCGGTGATGATGTTGATGGTGGCGGTGATGATGTTGATGGTGGTGATGGCGGTGATGATGATGttggtggtggtgatgatggttgcgATGATGGTTATGATGGTGgcgatgatggtgatgatggtggCGGTGATGATGATGTTGGCGGtggtgaagatgatgatgatgatcgGAGTGGTgttggtggtgatgatgatggttgcggtgatgatgatgatagcgGAGTGGTGTTGGcggtga

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89086 lncRNA downstream 83524 1542446 ~ 1544129 (-) True G60217
TU89043 lncRNA downstream 113358 1457970 ~ 1514295 (-) True G60199
TU89033 lncRNA downstream 134493 1401489 ~ 1493160 (-) False G60198
XR_006251559.1 lncRNA upstream 4558 1650920 ~ 1655010 (-) True LOC122350073
XR_006251560.1 lncRNA upstream 11376 1657738 ~ 1659992 (-) True LOC122350074
TU89078 lncRNA upstream 15127 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA upstream 17940 1664302 ~ 1666989 (-) True LOC122350072
TU89083 lncRNA upstream 27154 1673516 ~ 1684040 (-) True G60214
XM_043247339.1 mRNA downstream 21044 1561546 ~ 1606609 (-) True LOC122350657
XM_043247249.1 mRNA downstream 104189 1494505 ~ 1523464 (-) True dtx1
XM_043246610.1 mRNA downstream 173123 1447000 ~ 1454530 (-) True LOC122350264
XM_043246612.1 mRNA downstream 270700 1349171 ~ 1356953 (-) True LOC122350266
XM_043247081.1 mRNA downstream 375137 1250060 ~ 1252516 (-) False pym1
XM_043246173.1 mRNA upstream 63996 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 63998 1710360 ~ 1714216 (-) False LOC122349997
XM_043246175.1 mRNA upstream 102700 1749062 ~ 1762549 (-) False LOC122349998
XM_043247343.1 mRNA upstream 125620 1771982 ~ 1777474 (-) True LOC122350661
XM_043247344.1 mRNA upstream 134038 1780400 ~ 1821650 (-) True pi4kab
TU89094 other downstream 22540 1601521 ~ 1605113 (-) False LOC122350657
TU89090 other downstream 47037 1576805 ~ 1580616 (-) False G60220
TU89089 other downstream 48909 1576805 ~ 1578744 (-) True G60220
TU89022 other downstream 270722 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 468407 1140698 ~ 1159246 (-) True commd10
TU89063 other upstream 86502 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 102785 1749147 ~ 1753916 (-) True LOC122349998
TU89104 other upstream 102785 1749147 ~ 1755384 (-) False LOC122349998
TU89107 other upstream 102785 1749147 ~ 1751368 (-) False LOC122349998
TU89498 other upstream 413032 2059394 ~ 2061335 (-) False c8h22orf39

Expression Profile