RNA id: XM_043247363.1


Basic Information

Item Value
RNA id XM_043247363.1
length 3100
RNA type mRNA
GC content 0.47
exon number 11
gene id lrrc2
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 760218 ~ 770520 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagtgaggaCATGTCTGTGTCAGACGTGGTAAAGACACGAGGCAtcgaatcacacacacattaaaaatagcagCGTCTAAATACAGACGAGCTGTAAACAAGCAGCTGAACCTGGAAAGAGCCGCCGAGGAGCTGCTAGCCGCCGCAGtgcaCAAACTGATAAAGCAGAGCATCACTTCCCGTCATGAAGGCAGAGCGGGTCGGTGTAGACATTCCCGTCTATGATCTCTCTCTGATCCGAGATCTCTGGGAGGGACGTGTGAAGAAACACAAGCAGCGACAGAAGAAGGAGGAAGAGCGGATCAGTAAAAGTGCTCTGGCCAAGGTGGATCAGCAGTGGCAGTACCGCATCGCCTGCAGGAAGATGAAGAGCGCTGAAGTCACGGCCCTGCAGCGTTATCTGGAGAGATCGGCCCTCGGCCAAACACACGTCCTGTCCCACGAGAACGACGACAACGACACAGACGACAAGAAGTTCATTTTTGAGCTGAACGGGAAAAAGTGGATGAAACTACCTGAAGATCTTCAGTATATGACCTACCTGAAGGAGTGGCACATCCACGGGACCAGGATTCCCGAGATTCCCGCTTACATCGAGATGTTCGTGGATCTGCGAGTGCTGGACGTTCCCAAAAACGGTCTGACGAAGCTTCCCGCTGAAATAGGGAAGCTGGTGGGTCTGAGGGAGCTGAACGTGAACTATAATAAACTGTTGAGCATTCCACCGGAACTCGGAGAATGTGAGAATCTGGAGCGGCTGGAGATGACGGCGAACGGAAACCTGTCCGAGCTTCCCTTCGAGCTGAGCGCTCTCAAGAAACTCAGGCACCTGGACGTAGCAGAGAATCAGTTCGCTAGTATTCCTGTCTGCGTGCTCCGCATGGAAAGCCTGAGGTGTCTGGACATCAGCAACAACACACTCAAAGACCTGCCGGAAGACATCGACagTGCACTTCTGAATGTGTCCTTCGTCAGGCTCGAGTCTCTAGAGATGCTGTTCCTTCACAAAAACAAGGTACGCTACGTGCCGATGACCATGACCAACCTCGTCCACCTGAAGATGCTGGTCATCAGCGCAGACGAGCTCTACAGCATCCCGTCCCATTTAGTCGACAACCCTAACATCAAATTAATCCGGTTATACGACAACCCGATTAACGCCGACGATGAAGAGGAGGTGAAGATGGACGCAGAGGCCCAGGACGAGCGCGACAAGGAGTTCATGAAGACGTACATCGAGACTCTTCGAGACAGAGACACTCAGCCGTCGTACACCACTAAAGTGTCCCTCAGCTGCCTGCTGTAGACGTCTTCCACACATCGGTCTCAGAGTGTTTTAAACGAGTCTATTCTTTAGTTTTCTCATTCCGAGTTCAGTTCAAACCGAAAAGCAGGTTTACGCCGGATGACAAGCTTATTTGAGAAAGAGAGTTAGCGGGCGTCTTTATCATTCTTACTAGTTCGAGATCTCCATTTTGCTTTGGTTTTCTGTGAAGACTTCCAcggtttagtttgtttgatgcGACCAAACGCATGCCGATGAATACCGCCAGGGCGCTGTTTTATAAGAgtgtttaatttattctatttaaataaatctaaattccAATTTCCTATCTGGCCTTCAGCCGTGAATAAGACACTTATCCGATCCAGGAATATGAAGTGGTTTATTGAAACAACGAATAGCGAACAAACGTCTCGGCAAACGAACGCTTAATGTGCATCGATAAAATCTCATCGGAAGGCATCTACGACCCAGTCTTCAAGGAATGGCTGCATAGACGTGAAGAATGGCACCTAGAGCCGAAACAtcgttaaaaaacaaaaaacaaagtgcAGTTCATTGGAAAACACCTCAAACGATCCGCTCGGGTCGGAGCGCGTCCATCCACGGCGCCGATTGCATAAATAGAGTCGCATCTACACTTCTGCTTTGACATCGTTTTCAAGGACGCGTCGTGATCAGGTGTCCGGGATCGGCAAATGAAATGTCTCGTGATGCTCAGACAAACTGCTGCTAACAGAGTCATCGTCAGACCCAAGCCAGCCAGttcttcaattaaattaaagagtCTGCTCTGTCAGCAAGCGACGATAAATCCGCGAAGCTGCGTCAAAGCAATAGCATTAACAAGAAGAGATTCGGTCCTCTGGAAAGTTACTGGAAATGATATCAGGATGAAACATGAAATGCCTTTCAGGAATGATTCAGTCCTCGGGTCGGTAGAAATGGgcctctggagtgaatgggtgccgtcggaatgagagtctgattTAGAAACGCCAGAGCAATCCACAGCTCCCCGGTCCATAaattaacatctggagaagataAAAGGCGAGtctaatccagcattaagacgCTTTTAACCTAAACATGAGCCTATAATCTATAGTAACTGTGATCTGGTGTGAATCAGGAGAGACATCCGCTCGGATCTAAACACTGCGTCTGGACTCACGATGcactttttcactgaagaaagcaatattttagttaattctGGATTAGCTTGATCTTCCGTCTCCTCCGGGTGTTCACCGccgactctcattctgacggcacccattcacttccactgCCGAGACGCTCCTCCTGATCAGGGCCCGAGGTGAGGACTTATTAATCTGAACTAAACCGCTTCAATCAAGTCTAAGAGTAATGGTGAGGTAGCAGCTCTGTGTCGAGTAGCTGGTGCTCATGTACACGAGTTAcagattaaatacattttcttcataACGCTTCACCTATCAAAGCTGCACCTGACCTAAAGACAACGATTATGTCTGTTTTGTGCCATTTATCAGTAAAAGACGGCGCGCTCTGGCCGTATGTTGAAACGCTCTTAACTACGTTTGTCACGaggacattattattattactgcagtCTGTACAGGTTTAGCGCAGAGGTTAAAGTTCGTCAGTAATATAATAAAGGACTACAGTTTACATTCAGATACACGGCAGCACATGAACTACACTGCAAGAACCACTTCTTCACTTAGTAGTTTTATCCTTTTCATCACCAGTGCAAATGtctaaatattctgaaataaatttACTTGAAGCAAAATGATTAagtatatattcttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88859 lncRNA downstream 3575 755624 ~ 756643 (-) True G60061
TU88853 lncRNA downstream 25976 732840 ~ 734242 (-) False csgalnact1b
TU88767 lncRNA downstream 33189 725264 ~ 727029 (-) False LOC122349987
TU88765 lncRNA downstream 35218 723190 ~ 725000 (-) True G60003
TU88829 lncRNA downstream 99120 660435 ~ 661098 (-) True G60036
TU88877 lncRNA upstream 45950 816461 ~ 820768 (-) True G60079
TU88887 lncRNA upstream 62216 832727 ~ 835131 (-) True G60085
TU88879 lncRNA upstream 74908 845419 ~ 852159 (-) True G60080
TU88919 lncRNA upstream 105448 875959 ~ 876869 (-) True G60112
XR_006251688.1 lncRNA upstream 153937 924448 ~ 946339 (-) False LOC122351117
XM_043246162.1 mRNA downstream 12882 743193 ~ 747336 (-) False spinb
XM_043246161.1 mRNA downstream 12892 743193 ~ 747326 (-) False spinb
XM_043246160.1 mRNA downstream 12892 743193 ~ 747326 (-) True spinb
XM_043246163.1 mRNA downstream 13534 743193 ~ 746684 (-) False spinb
XM_043247330.1 mRNA downstream 20846 732793 ~ 739372 (-) True csgalnact1b
XM_043247783.1 mRNA upstream 13137 783648 ~ 786422 (-) True srp19
XM_043247912.1 mRNA upstream 32512 803023 ~ 809151 (-) False nudt12
XM_043247913.1 mRNA upstream 32512 803023 ~ 809151 (-) True nudt12
XM_043246380.1 mRNA upstream 114681 885192 ~ 914375 (-) True prdm6
XM_043246379.1 mRNA upstream 114681 885192 ~ 914374 (-) False prdm6
TU88852 other downstream 28598 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 189245 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 364890 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 370187 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 581399 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 806294 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 806294 1576805 ~ 1580616 (-) False G60220

Expression Profile