RNA id: XM_043247379.1


Basic Information

Item Value
RNA id XM_043247379.1
length 5051
RNA type mRNA
GC content 0.54
exon number 30
gene id LOC122350700
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16313504 ~ 16344494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGACAGCTGTGCGCTGTGGCTGTTGCTAAAGGGAGGAGAAAATCTCACGACGGAGGGCTTTTTTATCTCTTTCATTCGCAGCTAGGACCTTTGGAGGACTGGGAAGAGAACTAAACTGTAAAACCCACCCATACCAGTCGCGACTGAATTCTGTACTCCACATCCAGCCGTCAAATTAGTCGCGCCGTGGCTGAGCTGAACGATGGTGAAGCCAGACATTCACACTCTGGCCCACCACCTGAAGCAGGAACGGCTGTACGTGGCGTCAGAGAAGCAGCTCATCCAGCGACTCAACAATGAGGTGCTCAAGACAGCAGAGAGGCTCTACCGCGCAGCCTGGATCGCCAAACAGCAACGGATCAACCTCGACCGCCTCATCCTAACCAGCGCGGAGGCCTCTCCTGCGGAATGCTGCCAGCATGCCAAGGTTCTGGAGGACACACAGTTTGTGGATGGTTATAAGACACTGGGCTTTCAGGAGAGCATCTACGGGGAGTTCTTGAGCCGTTTGAGGGAGAACCCACGATTGGTGGCGTCCTGTCTGGTGGCAGGAGAAAGACTCAATCATGAACACACGCAGGGGGTCATACACACGGTCTTCACCTCACTCTATGGCAACTGCATCATGCAGGAGGATGAATGTTACCTTCTGCAGGTCTTACGTTATTTGGTGGAATTTGAGCTAAAGGAAAGTGACAACCCTCGTCGTCTGTTACGGCGAGGCACGTGTGCCTTCAGCATCCTCTTCAAACTCTTCTCTGAGGGCCTGTATTCGGctaagctttttctcactgcgACCCTCCACGAGCCCATCATGCAATTGCTGGTGGAGGACGAGGACCATCTAGAGACAGATCCAGGCAAACTGATAGAGCGCTTTACTCCGGCCCAGCAGGAGCGCCTGTTTGGGGAGAAAGGCACAGATGAGTACCGCAGGAAAGTTCAGGCAGCAGTGGAGGCCAACGAGGCCAAGCTGGTAGCTCTGGTCAATACCTTTATTGGCTACCTGAAGCAGAACACCTATTGCTTCCCTCAGAGCCTGCGCTGGATTGTGTCTCAGATGTATAAGACGCTGGCGCGGGTGGAGAGGTTAGAGGTCGGGGAGGTGAGGACGATGTGCACCGACTTGCTGCTCACCTGCTTCATCTGTCCAGCCATCGTCAACCCTGAACAGTACGGCATCATCTCAGATGCACCCATCAATGAGGTGGCACGTTTCAACCTCATGCAGGTGGGGCAGTTGTTGCAGCAGTTAGCCATGTCTGATGCAGATGATGGAGATCCTCGACGTAAAAGCAGTTTATCAAAGTTTGATAAGACGTGTGTTGCTGCCTTTTTGGATGTCGTCATTGGTGGAAGAGCTGTCGAGACTCCACCTATGTCGTCAATGAATTTGCTGGAGGGCCTCACACGGACGGTGGTTTACATGACTCACAATCAGCTTTTAGCTCTGGTGGACTTTGTGCGTAGCGTCACTGCAGGAGATCAGCTCAGAGAAGAAGACCACCTGGCTCTGGAAACCCTAATAGCCAATGTACCTCAGTCCCGGACCACGAAGAGCAACAGCCTGGAGCTCACACCCTCCAACACACCCCAGCTCTCCCCCGCTACCACACCCGCCAACAAGAAGAACAGACTCCCTATTGGACAACAGTTGGCAGCCATAACGTGTTGGGAACCCTCTGCCACTGCCCTGTCCGCTCATATACCCTTAGTAACCCCATTTGCAGGCTCTCGCAGCCGAAGCCGATCTAACATGGCCCAGGAAGGTGAGACTGAAGCCAGCTCCCAGGAGTCTCTGCAGGAGGTCACACCTGAGGAAGTGCTTGTCATCTCGCTGGGAACCTCACTGCAGACTGTACCTGGGATGATGTCTGAAAACGAGGTTCTGACTCTGCATCTTGGAGATGGTGGACAAGGAGATGCCCCCGTTGATGACACCAAACTGCATGGAAAACCTGACAAAACGCTGCGCTTCTCGCTCTGCAGTGACAACCTGGAGGGCATTTCTGAGGGCCCATCTAACCGCTCCAATTCAGTATCTTCTTTGGACCTTGAGGTGGAGTCTGTGTCCGAAGGAGGTCCAGGGCCGTCTGGTAGCAATGGTGCAGAGGCCTTGCAGCTACTGGAACATGAACAAGCCACTACACAGGATAATTTGGATGATAAGCTTCGCAAGTTTGAGATTCGGGACATGATGGGACTGACGGATGACAGGGACATTTCCGAAACGGTCAGTGAGACTTGGAGCACCGACGTCCTTGGCAGTGACTTTGATCCCAACATGGATGAAGACCGACTGCAGGAGATAGCAGGGGCTGCGGCGGAGAACGCCTTGGGCAGCATGCTGTGTCTGCCAGTACTGCTGGACCCATACGGGTCTACCATCTCCGAGACGACGAGTGAGGCGTGGAGCGTTGAGGTTCTGCCGAGTGACTCGGAAGCAGCAGACCTGAAGCAGGAGGAACGATTGCAGGAGCTGGAGAGCTGCTCGGGTGTGGGTAGCACTTCAGATGACACTGAGGTCAGAGAGGTCAGCTCCCGACCCAGCACCCCGGGACTCAGTGTCGTTTCAgGCATCAGTGCCACGTCAGAGGACATCCCCAATAAGATTGAAGACCTACGCTCAGAGTGCAGCTCAGATTTTGGCGGCAAAGACTCTGTGACCAGTCCAGATGGAGAGGACTCTGCTCATGGAGCTCACAGTCTATCCTGTGCACCCTCTCAAGCAGATTCACTGCTGGCCATGTTCGATCCCCTCTCCTCCGGAGAAGGTTCGTCCACTGGCACCATCGTGCGGCCCAAGGTACACTATCCCCGACCCCCTCCTCCCCCTGACCCGCCCATCCCAGAGGCCAGCATAACGGGCCACCAAGAGCCTCGTCCACCCCTCTTCGCCCCTCACCTGGCGCAGAGTGACCTGGAGCATCCCAAGCAGAGGCACTCTTACCCTGAAAGGCTGGTCAGGAGCCGCAGCACAGATGTGGTGTCCGCTGGCCTCAGACCCAACAGTGATCCTGGACTGAACCGCAGGACCATGATGGAGGAGAGAGATCCAGCTGGGGCTTATTCCACAGGACCCACCTCCTCTCCCAGCAAGGATTCACTCAAAGGAGAGTCTGAGGACAGGAAGGACAGTGATGATGAGAAGTCTGATAGGAACAGACCCTGGTGGAAGAAGCGTTTTGTTCCTGCCATTCCTAAAGTGCTCTATTGGACTGCAGAGGGTGAACTCCCAGTGCCGATTGGGGGGCTGCGAAAGCGGGACAAGCCGGAAAAAGATGAGCAAGGAGCAGAGAGGGTACCGCAAGGTATACCAGATGAGCCTTCAGCTTTCAGGCAGAGCTCTAAGACCCAGTCAGCAGAGGCAATAATGGACAAGTACAAGTACATCATGGAGAAACGACCCACTCACAGTGATGGGGCAGTTGCTGGGAGTTATGTTGGACAAGaGCCTTGTAGAGAAGGGGACAGTGAGCACGACTCCCCTAAAGATGAAGCTCTGCAGAACATCTCTGCAGATGACCTTCCAGACTCTGCCAGTCAGACAGCGCCCCCTCAGGACAAGACTTTCTCCTTCAGCGATATCAAGAAAAAGCTTCGCCTGGCGCTGTGCTCTGCAGATTCAGTTGTATTTCCCATCATTCCAGCAGCAACAACACGTAATGGTCTCCCGGACCATGCAGATCCTGAAGacAACGAGATCGTGTGCTTTCTGAAGGTGCAGCTGGCGGAGGCCATTAACCTGCAGGATAAGAACCAGATGGCTCAGATCCAGGAGACTACGCGCTGCGTCAGCCACCTCGACCCCCGCACCTGCAGAAAACTGCTCACTGCCATGGCAGAGGACTACAGGAAGCGTGCTCCGTACATCGCCTATCTGACACGGTGCAGGCAAGGCTTGCAGACGTCTCAGGCTCATCTGGAACGACTCCTGCAGAGAGTGTTGAGAGACAAAGAAGTGGCCAACCGCTACTTTACCACTGTCTGTGTCCGACTGCTCCTGGAACACATGGAGTCAAAGATGCTGGACTTCATCAAAGCGTTTCAGGGCTGTACAGCAGCTGACGATAAGACAGCAGCCGTAGAGGATTTCCTGCGTTACCTGTATGGAGCCATGGCCCACGATGCCATCTGGCAGTACGCCAGTGAAGAGCAGCTCCAGGACGCCCAGATGGCCATCGAACGCAGCGTCATGAACCGCATCTTCAAACTGGCATTCTACCCCAATCAGGATGGGGACATCCACAGAGACGAGCTATTCCAGGAGCACATTCACCGACTGTCCAAAGTGGTGACGGCCAATCACAAAGCCCTGCAGATCCCAGAGGTGTATCTGAAAGAGGCACCGTGGCCCTCAGCACAGGCTGAGATCAGGACCATCAACGCCTATAAGACCCCACGAGATAAAGTACAGTGCATCCTGCGCATGTGCTCCACAATTATGAACCTGCTCAGCCTGGCCAATGAGGACGCAGTACCTGGGGCGGACGACTTTGTCCCTGTGCTCGTCTTTGTCCTGATTAAAGCAAACCCACCCTGCCTTCTGTCCACCATTCAGTACATCAATAATTTCTACGCCAGCAGGCTGAGCGGGGAGGAGTGCTATTGGTGGATGCAGTTCACTGCCGCCGTGGAATTCATTAAAACCATCGACGATCGCAAGTGAAGCAGAACAGCCACCTGTATGGGCAGACTGCaggaaggagaaagagaaagagagagagagagaggacggCGCGGACAACTCTCCCCTTCATCGAGAACGCACAGCGCGGCATCGCCTCAGTCTGTAAAGCTGTACATAGAGGCAAAAACACTTCACGTTTAAATTCGATCAAACATTAGATATGATCATGACAAGATTTCCTACGCTGTGGTGTTAAacgaataaaaacaaataacgcGGCAGGTGGCGACATCGCCGCTCTCTACCGATCTCGCTTATGTAACACGCGTCTTTTTCTGTAGTGCTGGGGAGGTGCTGGGGTTTAGAatcaaattttatattaaacacagATTTAGCAAGTAATTAGCTCTGTTAAAAC

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251654.1 lncRNA downstream 30112 16261537 ~ 16283392 (-) True LOC122350933
TU95376 lncRNA downstream 180692 16131611 ~ 16132812 (-) True G64481
XR_006251675.1 lncRNA downstream 218944 16079362 ~ 16094560 (-) True LOC122351008
TU95371 lncRNA downstream 249751 16062879 ~ 16063753 (-) True G64476
XR_006251684.1 lncRNA downstream 531617 15767668 ~ 15781887 (-) False LOC122351100
TU95397 lncRNA upstream 28827 16373321 ~ 16376597 (-) True G64502
TU95398 lncRNA upstream 32620 16377114 ~ 16377369 (-) True G64503
TU95412 lncRNA upstream 35367 16379861 ~ 16384905 (-) True G64508
XR_006251563.1 lncRNA upstream 63360 16407854 ~ 16409696 (-) True LOC122350093
TU95443 lncRNA upstream 115463 16459957 ~ 16460330 (-) True G64531
XM_043247395.1 mRNA downstream 121160 16191087 ~ 16192344 (-) True LOC122350711
XM_043248017.1 mRNA downstream 321246 15967511 ~ 15992258 (-) False LOC122351126
XM_043246367.1 mRNA upstream 9414 16353908 ~ 16363944 (-) True setd1bb
XM_043247401.1 mRNA upstream 54082 16398576 ~ 16407398 (-) True LOC122350716
XM_043247402.1 mRNA upstream 418803 16763297 ~ 16835560 (-) True LOC122350717
XM_043247728.1 mRNA upstream 701973 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA upstream 701973 17046467 ~ 17096791 (-) True LOC122350945
XR_006251609.1 other downstream 612608 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 612608 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 1029374 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 1531794 14779531 ~ 14781710 (-) True G64228
XR_006251614.1 other downstream 1582113 14724208 ~ 14731391 (-) False slc20a1a
TU95424 other upstream 63340 16407834 ~ 16409664 (-) False LOC122350093
TU95703 other upstream 978566 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 980550 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other upstream 1014891 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 1014891 17359385 ~ 17361850 (-) False zgc:194007

Expression Profile