RNA id: XM_043247412.1


Basic Information

Item Value
RNA id XM_043247412.1
length 765
RNA type mRNA
GC content 0.54
exon number 11
gene id rflna
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17456142 ~ 17464579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTGGggcatttacattttcaaGCTATGGATGAGAGTTTGAAAGGAAAGAACAGGAGGACTGCAGTAGTCGGTTCAGGACTCCCTCCAGCCCCAAGTCCGCCTTCTTCTCTCTGTCACGGGAGTTCTCGAGAGTCGCGCTCCGGCAGCTGCTCAGCCCCAAACGAGCTGCAAAGATACTGCAGAAAAGGCCGGGAAGGCAAACTGCTGCCATACTTGCTCCTAAACTCTCAAGGTCCAGATGCGAAGTCACGCATGTACCCTGTGGTCCACGGAGAGAGCATCGAGGTTAACCCCAAACCAGAAAAAGAGATCAAGTTCAACTCTGCGGTGAAGTACGCTTCAGAAAGACACTTCCGTGACCAGGTGTTCTGCGCCCAGGTCCCGACCGCCACATCCTTCAGCGAGACGGTGGTGGCCGTTCACAACTGCACGCGTGGGCGCAGCTACAAGTCAGAGGTTCACACCGAGCCACGGCACAGGGCGCTACACTAAAGCACCACCATCGTGTTCCCCAAACACACCCGGAATACATACCGCACCACGCTCAACTACAACGGCAACAGAAACACAGCCGGCGCGGGTTTTGTGTTCACAGTCAGGCTGGAGTACGAGGACGCCAGCCCATGCATCATTACACAGAAGACCTCTGAGAGACGCGTGATCCTTCCCAGAATTCAAAAACTCCCTTTGGTTAGAGAGCTACGAGAACGTGGAGAGTTTCAGGAGCCGCCCGACGTGCTGATAATTCAGTGGCCAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95730 lncRNA downstream 43270 17411009 ~ 17412872 (-) True G64724
XR_006251571.1 lncRNA downstream 90632 17362169 ~ 17365510 (-) False LOC122350118
XR_006251569.1 lncRNA downstream 90638 17362169 ~ 17365504 (-) False LOC122350118
XR_006251568.1 lncRNA downstream 90638 17362169 ~ 17365504 (-) False LOC122350118
XR_006251570.1 lncRNA downstream 91160 17362169 ~ 17364982 (-) True LOC122350118
TU95776 lncRNA upstream 136687 17601266 ~ 17645509 (-) False kcnip3a
TU95777 lncRNA upstream 136687 17601266 ~ 17619155 (-) False kcnip3a
XR_006251626.1 lncRNA upstream 193230 17657809 ~ 17660978 (-) False LOC122350842
TU95783 lncRNA upstream 193995 17658574 ~ 17660966 (-) True LOC122350842
XR_006251627.1 lncRNA upstream 194577 17659156 ~ 17660978 (-) False LOC122350842
XM_043246317.1 mRNA downstream 94292 17359385 ~ 17361850 (-) False zgc:194007
XM_043247728.1 mRNA downstream 359347 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA downstream 359351 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA downstream 359352 17046467 ~ 17096790 (-) False LOC122350945
XM_043247402.1 mRNA downstream 620582 16763297 ~ 16835560 (-) True LOC122350717
XM_043246070.1 mRNA upstream 76247 17540826 ~ 17543078 (-) True prnpa
XM_043247723.1 mRNA upstream 87941 17552520 ~ 17567609 (-) True rassf2a
XM_043247724.1 mRNA upstream 87941 17552520 ~ 17563121 (-) False rassf2a
XM_043246760.1 mRNA upstream 104841 17569420 ~ 17597847 (-) False slc23a2
XM_043246759.1 mRNA upstream 104841 17569420 ~ 17597847 (-) True slc23a2
TU95705 other downstream 54914 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other downstream 94292 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other downstream 94292 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other downstream 94292 17359385 ~ 17361850 (-) True zgc:194007
TU95703 other downstream 112403 17323060 ~ 17343739 (-) False LOC122350953
XR_006251590.1 other upstream 642874 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 690556 18155135 ~ 18157543 (-) True G64967
TU96164 other upstream 1095088 18559667 ~ 18560334 (-) True G65033
TU96415 other upstream 1566408 19030987 ~ 19039551 (-) False LOC122350102
XR_006251696.1 other upstream 1737698 19202277 ~ 19202377 (-) True LOC122351133

Expression Profile