RNA id: XM_043247430.1


Basic Information

Item Value
RNA id XM_043247430.1
length 2484
RNA type mRNA
GC content 0.46
exon number 5
gene id lhfpl4b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3845453 ~ 3850590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCCGTCTCCCACTCTCCTCTCCCTCCATATGTGCGAGGAAGATGGTTGCGAGCGGCGTGGGCCTGTTTTAATGTCGCACATCCTGCCTTGATCCCTccgggaggaagaggaggagaagaatcCCTCCATTCGGATCCTGTGGTGGGAGGAAGAGACCTGGAATCAGCCAAAGCAGAGAGGTGAAGCTCCCTTCATCCATCTCTTCATTCACCAGCATGCAGCATCACTCGTCTGAGGTGGCCCGTCTGTATCAGACCGAGTTCATCCGGAGCGCTCGGGCGGTGGGTGTGCTGTGGGCCGTCTGCACGCTCTGCTTCGCCGTGATCGAGGTGGTCATTCTCATCCAGCCGTCGTGGGTGGGCACACGTGAGCTGCACTTCCGGGAAGGGGGTCCGGCTCCTCCGACCGGGACGCTGGGCCTCTTTGAGGTCTGTATGGAGACGGACTGGCCCGTCCCAGAATGCCGGGGGTCTCTCCACACCCTGACCCCGCTCCCTGCCTTCCAGTCTCCCGCTGTGCTGGTCTGCATGTCTCTGACCATGGTGTGGGCCAGCGTGGGCTGCCTGTGTCTCTTCAGATTCTGCAATGCAGCAACCGTCTATAAGATCTGTGCTTGGCTGCAGCTCACAGCAGGCTTCTGTTTGGCTCTGGCGTGTGTGTTGTTTCCAGACTCCTGGGCTTGTGCTGAGATGCGGGCGTTGTGTGGGGAGCGTGTGAGTAGTTTCTCCCCGGGAAACTGCTCTGTGCACTGGGCGTACATACTGGCCATGCTGGGGGTGCTGGACGCTGCTATACTGGCCACGCTGGCTTTTGTTTTGGGGAATCGCCAAGATGCCCTGCTGCCAGAAGATGCAAAGGATGGTGACGTGACTGGCTTGTTACTGGCAGCATAAACCAGGACTGAGCTGTTCTCAGCAGTCAGAAACTGCTGATAAGACAGTAGTCTGGTTTCTCTGGGGATTGTTCTTCTCTCCTGTAAGTCAGGTCACagttctttctcctcctctcagCTGACCGTTTCATCACGTCGTTTGTGCACTTCTCTTTCGACACATAATGATGACATAAAACGTGTGAAGAGATGCTTCTCTCTTCCCCCTCAGCATGATGTCATCATCCTGTGAATTCTGCTTACATAACCTGTCTGCATAGAAACAGTCACCTGGCAACAGTATCCGAGTCCTCTCTGCCCTGGCGGAGGAGCATTACTGTGATCTTGTAATGGCGGCTCTAAATAGAAAAGAGGAAAGGCCATTTTCTTTAGTGCATTTCCAACTGTCTCCATGACCTGCTGCGATTCACAAACGGATCGCATCAGTTTGGTTTCcagttaaataatgttttaagatGTGACGTTTTATACTGTGTTCTGGACGTTTTGTGCATGAATTTAAGACGAGGACTGGAGTAGTTATATATGCAGCATTATAATACTGTGAATCTGTTTAGTTAGTTTTGTTGTTTCCTTTGTCAGTAAGGTCTAAAATTTGTATTTGCTGATTCGATCGCCTTTAGGCTAAAAGTAGCAAATGCAATGCATGCAATCagtatttgccttttttttttgtccaagagtttatttcttcagcaaaacagatttggagaaatttggtATTGCATTACTTGCTCACAAACACACCGCTTTTAACtccacaagatgttaactgatggagtgttgtggattattgtgacgctttaatcagctgtttggactctcattctgacggcacccattcactgcagagcatccattgttCAGCTAGTACCGTaaagctacatttctccaaatctgctttttttttttttttttgcatgccaCTGTTGCATTTGTCTTTAGCCAAATATAACGAATCCCTGTCTTAGTTGTTATTCTGTTTATATgcaatgttaaaatgtcatttcttcGAACCGTCGCATTAAATGTTGAATGTGATGTAACTTTTAATCCACTTCCACTgcaaaagcaatgcaaagtTCTAAACAAAATATCGGTGTTCACATACACTTTATTAGCACTTACAgtgatttttgttgtttgacAAAACTTGCAGTGCAgagatatgtatttttgtacaaGATTTTATGACTGCACAAATATcgaaaagcatttatatatactagGAGCCACGATTTCCTTCACAAATTCATAATAGTCAGATTACAAACCCAGAGGGCAAGAAGTTGGGACAGTGATTAGTATCAGACAGAATGTTTCCAAGCCAAGTCAAGGGACAAAAAACACTTCATCAAGCTCGAATAGGATGCATATGACATTAAGAAGATGGTACACCACTTTAGATAGCcattcagagaaagagaggacagGAAACTCACTTACAGCAGGTTTGACATTTAGACAGGctctttttgagtctaaacTCCTGTAGCGCTGCCTCTTGCCGTATAAAGCAGCTGATCTGATGTGTTGTGCTGTTTAAACCTGTACCGGATATCTTATGCAATAAATAGATTCCAATCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90035 lncRNA downstream 80370 3762453 ~ 3765083 (-) True G60850
TU90015 lncRNA downstream 111258 3733335 ~ 3734195 (-) True G60839
TU89998 lncRNA downstream 139147 3704732 ~ 3706306 (-) True G60830
TU89985 lncRNA downstream 140999 3645219 ~ 3704454 (-) True G60819
TU90212 lncRNA upstream 119854 3970444 ~ 3996691 (-) True G60932
XR_006251682.1 lncRNA upstream 148247 3998837 ~ 3999610 (-) True LOC122351087
TU90228 lncRNA upstream 148385 3998975 ~ 3999574 (-) False LOC122351087
TU90233 lncRNA upstream 151029 4001619 ~ 4006782 (-) False zgc:113363
TU90222 lncRNA upstream 170293 4020883 ~ 4024734 (-) True G60937
XM_043246376.1 mRNA downstream 45279 3769300 ~ 3800174 (-) False grip2a
XM_043246375.1 mRNA downstream 45279 3769301 ~ 3800174 (-) False grip2a
XM_043246374.1 mRNA downstream 45279 3769301 ~ 3800174 (-) True grip2a
XM_043246372.1 mRNA downstream 45283 3766554 ~ 3800170 (-) False grip2a
XM_043246371.1 mRNA downstream 45284 3766554 ~ 3800169 (-) False grip2a
XM_043247789.1 mRNA upstream 904 3851494 ~ 3864352 (-) False hdac6
XM_043247788.1 mRNA upstream 904 3851494 ~ 3864088 (-) True hdac6
XM_043247790.1 mRNA upstream 904 3851494 ~ 3862430 (-) False hdac6
XM_043247561.1 mRNA upstream 16890 3867480 ~ 3873578 (-) True gata1b
XM_043246240.1 mRNA upstream 25131 3875721 ~ 3879595 (-) True cdk20
TU89795 other downstream 810361 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1032346 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 1293267 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 1381082 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 1783972 2059394 ~ 2061481 (-) True c8h22orf39
TU90264 other upstream 238134 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 450402 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 542623 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 1336725 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 1346021 5196611 ~ 5197889 (-) False LOC122349940

Expression Profile