RNA id: XM_043247469.1


Basic Information

Item Value
RNA id XM_043247469.1
length 1979
RNA type mRNA
GC content 0.47
exon number 7
gene id ciao1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2934045 ~ 2938344 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCACTGAAGCACGAAACAGGAAGCGGGAAGCTGCTGATAAACAGAAGTCTTGAAAGCGGTGTGACATTCGAGCGAGGATAGCGTTGGATGTCATACACTCGCATGTCATATAATTAGAAGAATCGTACAGTTATAAGAGATGAAGGGCGCGCTGGAGCTGCTGCAGAGGGTGAGCGCGCACCCGGACGCGCGCTGCTGGTACGTCGCGTGGAACCCCGCGGGAACGCTGCTCGCGTCGTGCGGCGGGGACCGCGCCGTTAGAGTTTGGGGGAAAGAagGGGACAGTTGGGAATGTAAGTGTGTCCTGGCTGATGGACACCAGCGTACGGTCAGGAAGGTGGCCTGGTCTCCCTGCGGGAAATATCTGGCATCCGCCAGCTTTGATGCCACAACGTGCATCTGGAAGAAGACGAATGATGACTTTGAGTCCCTGACAGTGCTAGAAGGTCATGAGAACGAGGTCAAGTGTGTGGCCTGGGCTCCGTCTGGAAACTTGCTGGCCACCTGCAGCAGAGACAAAAGTGTTTGGATCTGGGAAGTGGACGAGGAGGATGAATATGAGTGTGTAAGTGTTGTGAATTCACACACGCAGGACGTGAAGCATGTGGTCTGGCACCCGACACAGGAGCTTCTCGCATCAGCCAGTTACGACAACaaagtgtgcatttataaaGAGGAGGATGATGACTGGGAGTGTAGAGCCACGCTGGAGGGTCACGAGTCCACCGTTTGGAGTCTGGCCTTTGACCCTGAAGGACGGAGATTGGCGTCGTGTAGCGATGACCGCACCGTGAAGATCTGGAAGGAGTCGACGCCTGGAGACGGTTCGTCAGATGAGTcctggaagtgtgtgtgtaccttGTCTGGATTCCATGGAAGAACGGTATATGATGTCGCATGGTGTCGTCTGACCGGTGCCCTGGCCACAGCGTGTGGCGACGATGGAGTTCGCGTCTTCAGAGAAGACCCCACTGCTGACCCAGAGCAGCCCATCTTCAACATGTCAGCTCACGTGCCCAAAGCCCACAGTCAGGACGTCAACTGTGTGTCCTGGAACCCGAAGGAGGCGGGCCTGCTGGCCACCTGCAGCGATAACGGAGAGTTTGCCGTCTGGAAGTACAACTCTGATTCCTGAGCTGGTGAATGGCACTCGAACACACAGAAGCACTGAATGAGTTTCAGCCGCTTAAGCGACATCGTGGGTCATAATGAGGAACGATGGCTGTTTTTATTCCGGCTGTGAGTGAGGAAACTGTGTGTTGGATTGAAAGACAGTACGCTCTTTAACTCGTGTCACTctcttttagtgtttttgatgGGTCAGTTGTAACTTATCAGAATCGTTTTAGGCGGTATGGATATATTTTAGCTTAAAATGTGGCTTAAAATACCTACAGTGCTTTAATGAAATAAAGCTTCTTGATGCTGAagataaaacaaacagttttttcGGGTTTATCACGTCCCAGAACCATCCGTTTAGATTGATGTTAAACGCATTAAAAGGATGTTTAGTGAACTCATCTATAATAGTTGTTTTAAAGTAACTTTCCATTTTTAATAGACCTTTGTCAGggtaaatttttactttttgacaGCAAAGCAAGCAAGATTGGGACAGAAGTACATTGCGTTCAGTGAATTGAACTGTTTTTTAACAACATGCTGATTCTGGGAGAGACGAGTAAACAAAAACTCTAGGACCTTTATGCGGTGCGTGCCACCATAAAGACTAAATCTGTCTTTCACAGCCTCATTTTCAactattaaatgaaatttgGCCATGATACAATCATGATAGATCttgaaaatgacataaaaaagactgtaaagttgttttaaatgcCCATTTCAGTGTAATTTCTACTTTTCTAAACTTCTTGTTATAAGTTACTGATGAAATATTGGATATTTCATatccagttttattttatattttataggcTCTACTTTATTAAATGTGGAATCTTGTGGA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG:

id description
K24730 CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89694 lncRNA downstream 120867 2804304 ~ 2813178 (-) False rad9b
TU89699 lncRNA downstream 120938 2804304 ~ 2813107 (-) False rad9b
TU89695 lncRNA downstream 126546 2782620 ~ 2807499 (-) False rad9b
TU89696 lncRNA downstream 126546 2804304 ~ 2807499 (-) False rad9b
TU89697 lncRNA downstream 126546 2804304 ~ 2807499 (-) False rad9b
TU89738 lncRNA upstream 936 2939280 ~ 2940478 (-) True G60638
TU89741 lncRNA upstream 5373 2943717 ~ 2944007 (-) True G60640
TU89740 lncRNA upstream 7066 2945410 ~ 2945931 (-) True G60639
TU89845 lncRNA upstream 622665 3561009 ~ 3561418 (-) True G60719
TU89846 lncRNA upstream 624248 3562592 ~ 3563073 (-) True G60720
XM_043246257.1 mRNA downstream 4110 2921713 ~ 2929935 (-) True cdc45
XM_043246753.1 mRNA downstream 22184 2884344 ~ 2911861 (-) True zgc:63587
XM_043246752.1 mRNA downstream 50706 2869613 ~ 2883339 (-) False sept5a
XM_043246751.1 mRNA downstream 50767 2869613 ~ 2883278 (-) True sept5a
XM_043246755.1 mRNA downstream 65289 2865388 ~ 2868756 (-) True gp1bb
XM_043246710.1 mRNA upstream 14389 2952733 ~ 2993383 (-) True igsf9b
XM_043246025.1 mRNA upstream 55591 2993935 ~ 2998395 (-) True tmem230b
XM_043246024.1 mRNA upstream 55591 2993935 ~ 2998394 (-) False tmem230b
XM_043247563.1 mRNA upstream 104837 3043181 ~ 3067341 (-) True dpysl2a
XM_043246888.1 mRNA upstream 131157 3069501 ~ 3080742 (-) True bnip3la
TU89698 other downstream 120938 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 381859 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 469674 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 872564 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 872710 2059394 ~ 2061335 (-) False c8h22orf39
TU89795 other upstream 94123 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 907109 3845453 ~ 3850590 (-) False lhfpl4b
TU90264 other upstream 1150380 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 1362648 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 1454869 4393213 ~ 4397074 (-) True G61071

Expression Profile