RNA id: XM_043247485.1


Basic Information

Item Value
RNA id XM_043247485.1
length 1790
RNA type mRNA
GC content 0.44
exon number 8
gene id bgna
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6816911 ~ 6824013 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATGTctcaaatgcacatttttttccctctttttgcAAGCTGTCCTGTGTTTTGAATTGCAGGTACTGTTCAGTGCTGTGTGACCGCTGGCAGCCAAGGACCTAACAGACAGTCATCCAAAACAATGATCAAACTATAAATCAGTTTgccaaaagaaacattaaaaagaagaaataatctccaaataaatatcacacatcAGATTAAAAAACGTAGCAGCCATGTTGTCGATCTatgttgcttttctttttctctgcacTGCCCACCTGCCACTAGACACTTCCGCCCTTCCCTTCGAGCAGAAAGGATTCTGGGACTTTGGCAAGGACATTGATGTGAAAgagctgatgatgatgatgaaggacCAGGAAGAAGGGTCAGCTGTGGATCCATACCAACCGGAACATCCCACATGTCCATTTGGCTGCCGGTGCGACCTCAGAGTTGTTCAGTGCTCGGATTTAGGTTTAGGTTACGTGCCATATGATATTCCTAAAGACACACTGCTGTTGGACCTGCAGAGCAACAGGATCGCAGAGATCAGGGAGGGAGACTTTAAAGGATTGACCAACCTCTATGCCCTGGTGTTGAGATATAACCAGATCTCAAAAGTGCATCCCAAGGCATTCCTTCCTTTGCAGCGTTTGCAAAAATTATACATCTCACACAACCTTCTGACTTCCATCCCCAAAAACCTGCCTCCATCCCTAGTGGAGCTGCGTATCCATGACAATAACATCAAGAAGGTGCCGGCATATAGCTTTTTAGGCCTCCACAACATGCATGTCATTGAAATGGGTCGTAATCCACTACAGAACAGTGGTTTCGAACCTGGAGCATTCATGGGCCTTACACTGAACTACTTGCGCATTTCTGAAGCCAAACTCACTGGAATTCCCAAAGACCTTCCCAGTAGTCTCAATGAGCTTCATTTGGACAGTAATCAGATTCAGGCCATTGAATTGGTGGATCTCAGCCAGTACCTCCAGCTGCAGAGGTTGGGACTCGGCAGTAACCAGATTCGCCATATTGAGCATGGTGCTTTATCTTACCTCACCGACCTGAGAGAGCTACACCTTGACAACAACCGTCTGTCCAGTGTACCCGGCGGACTGCCTCATCTGAAGTATTTGCAGGTTGTCTACCTCCATTCAAACAACATCACTAATGTTGGAGTGGATGACTTCTGCCCTACGGGTTTCGGAGTGAAGAGGGTGTTCTACAATGGCATCAGCCTCTTTGACAACCCAATCAGGTATTGGGAGGTGCAGCCCGCTACGTTCCGCTGTGTCAGTGACCAAATGGCTGTACAGTTTGGCAAccacaagaaataaaaaaaaaaaatgcgccAAACCAATCCAGGAGGAGAACAAGAGGAACACGCCCATAATTTGTTTTGATCAAGATATTGGAGGGAAGaagatgaataaacattttcaaggAGGCGTAATTCAGAAGAAACATAGACTCCATTTAAACGGAAGTCAAAGTCCAACCGGTctatttaaaactgaatactGATGTGTGTAATTCCCTGCTGTCATTAATGAATATATACTCCACAAATTGCCtttctgtttaatttagttGACATACAGCATTGATGATTCCTTGACATGTCTATCAATAGCGTCGTTTGCTTAGTTTCCATGGGTTGCATCTTCAAATAATGAGATAAATTCACAGTTTGTCATTCTGGACGGCTGATTGTCACTCATTCATCATggtaatattactgtaataaagtGGATTATGTTTATCATGCCATCACAAGACAGCCAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91286 lncRNA downstream 158627 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 254993 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 265200 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 348495 6467953 ~ 6468416 (-) True G61582
XR_006251622.1 lncRNA downstream 541701 6273884 ~ 6275210 (-) True LOC122350799
TU91452 lncRNA upstream 38015 6862028 ~ 6862954 (-) True G61782
TU91454 lncRNA upstream 193577 7017590 ~ 7056420 (-) False xpr1a
TU91585 lncRNA upstream 450577 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 482099 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 553742 7377755 ~ 7378459 (-) True LOC122350886
XM_043246321.1 mRNA downstream 164 6814471 ~ 6816747 (-) True LOC122350104
XM_043246913.1 mRNA downstream 2571 6807841 ~ 6814340 (-) False dedd
XM_043246912.1 mRNA downstream 2571 6807841 ~ 6814340 (-) True dedd
XM_043247839.1 mRNA downstream 15316 6776275 ~ 6801595 (-) False atp2b3a
XM_043247840.1 mRNA downstream 15321 6776275 ~ 6801590 (-) False atp2b3a
XM_043246634.1 mRNA upstream 1325 6825338 ~ 6834435 (-) True si:dkey-6n6.1
XM_043246636.1 mRNA upstream 17773 6841786 ~ 6847353 (-) True rhoaa
XM_043246637.1 mRNA upstream 24460 6848473 ~ 6849715 (-) True ndufb11
XM_043246033.1 mRNA upstream 26503 6850516 ~ 6859706 (-) True def6a
XM_043247679.1 mRNA upstream 36894 6860907 ~ 6874965 (-) False sin3b
TU91442 other downstream 187 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 373929 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 891564 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1199247 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1207341 5605562 ~ 5609570 (-) False c8h9orf116
TU91479 other upstream 270885 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 854403 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1292995 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1568332 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 1603602 8427615 ~ 8427687 (-) True LOC122351129

Expression Profile